Assessment of Genetic Diversity in Bulgarian Raspberry Germplasm Collection by Microsatellite Markers (SSR)

Badjakov, Ilian; Todorovska, Elena; Boicheva, R.; Atanassov, Ivan; Atanassov, A.

doi:10.1080/13102818.2005.10817152

Cited by 13 publications

(17 citation statements)

References 10 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…Significantly lower polymorphism was found for loci Ru 26, Ru 223 and Ru 277 (Table 3). Our data were very similar to data published by Badjakov et al (2005), acquired from analysis of 16 Bulgarian raspberry varieties. Nevertheless, the set of 15 SSR markers allowed discrimination of raspberry cultivars by unique genotypes, except for two pairs of cultivars: the Russian cultivars 'Brigantina' and 'Kirzach', and the Canadian cultivars 'Carnival' and 'Comet'.…”

Section: Discussionsupporting

confidence: 80%

“…The SSR markers used in this study were selected from several previously applied sets of markers (Graham et al, 2002;2004;Badjakov et al, 2005). Therefore, comparison of obtained results was possible for loci Ru 26,Ru 118,Ru 223,Ru 108,Ru 277,Ru 126,Ru 157, which were used in characterisation of collections with a comparable number of accessions.…”

Section: Discussionmentioning

confidence: 99%

“…Therefore, different molecular markers are very useful to distinguish between genotypes and for study of genetic diversity or relatedness. Markers such as RAPD (Graham and McNicoll, 1995), AFLP (Graham et al, 2004;Sargent et al, 2007;Miyashita et al, 2015), and SSR (Graham et al, 2002;2004;Badjakov et al, 2005;Stafne et al, 2005;Lopes et al, 2006;Sargent et al, 2007) have been applied also for Rubus species. Combined germplasm characterisation including both phenotypical and DNA-based methods is the most effective approach to compensate the shortcomings of each method.…”

Section: Introductionmentioning

confidence: 99%

See 2 more Smart Citations

Evaluation of Red Raspberry Cultivars Used for Breeding and Commercial Growing in the Baltic Region

Lācis

Kota-Dombrovska

Strautina

2017

Proceedings of the Latvian Academy of Sciences. Section B. Natural, Exact, and Applied Sciences.

View full text Add to dashboard Cite

The structure of raspberry cultivars and genetic resources in the Baltic countries have been influenced by the historical political situation in the 20th century and climatic conditions, especially winterhardiness. The genetic resources consist of some old European and American cultivars, but mostly of cultivars and hybrids bred in Russia. Currently, targeted breeding programmes are active only in Estonia and Latvia, which aim to develop winterhardy, disease-resistant cultivars, well adapted to the local climate. Therefore, parent material for hybridisation has been chosen from local advanced hybrids and introduced cultivars suitable to the regional climatic conditions. The aim of the study was to estimate the level of genetic diversity of Rubus germplasm and assess inter-specific and intra-specific relationships using phenotypical characterisation and molecular markers. Forty one Rubus genotypes were evaluated by 41 phenotypical traits and 15 previously described SSR markers. Both characterisation approaches discovered high correspondence with pedigree and a low level of diversity. A limited amount of the diversity of raspberry genetic material has been used in various breeding programmes, despite their broad geographical origin. The obtained results indicate the need for including local wild R. idaeus plant material into breeding programmes.

show abstract

Section: Discussionsupporting

confidence: 80%

Section: Discussionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

Evaluation of Red Raspberry Cultivars Used for Breeding and Commercial Growing in the Baltic Region

Lācis

Kota-Dombrovska

Strautina

2017

Proceedings of the Latvian Academy of Sciences. Section B. Natural, Exact, and Applied Sciences.

View full text Add to dashboard Cite

show abstract

“…The combined use of these different marker systems provides a more reliable analysis than either one alone. The RAPD and SSR markers have been used to assess the genetic diversity in many crops, such as alfalfa (Mengoni et al, 2000), raspberry (Badjakov et al, 2006) and eggplant (Demir et al, 2010). Overall genetic similarities in the current study were in the range 0.591-0.936, which agrees with the findings in Nakkanong et al (2008).…”

Section: Genetic Similarity Analysissupporting

confidence: 83%

Performance and genetic assessment of rubber tree clones in Southern Thailand

Pethin

Nakkanong

Nualsri

2015

Sci. agric. (Piracicaba, Braz.)

View full text Add to dashboard Cite

Thailand is the world leader in the production of latex extracted from the rubber tree (Hevea brasiliensis). However, the most cultivated clone RRIM 600, is highly susceptible to diseases, and there is economic incentive to develop new rubber tree clones. Four rubber tree clones (T2, SK1, NK1 and SK3) that have high latex yield potential from plantations in Southern Thailand were selected for this study. Yield performance, latex biochemical parameters and anatomical characteristics of bark were monitored for two years, using RRIM 600 clones in the same fields as paired controls. The average yields of the clones SK1, NK1 and SK3 were 129.3, 74.2 and 53.9 g per tree per tapping, respectively, surpassing the paired RRIM 600 controls (94.3, 49.9 and 43.9 g per tree per tapping in matching order). There was a difference in girth increment of SK1, SK3and T2 clones when compared with RRIM 600, whereas the clones SK1 and T2 had higher renewed bark thickness than the paired RRIM 600. The anatomical measurements showed that the diameter of the latex vessels and density of latex vessels mm −2 were the highest in clone NK1, which also had the best latex biochemical parameters. This indicates NK1 is superior, and supports its use inHevea breeding programs to improve latex yield. Our genetic characterization and assessment of the four clones selected used Random Amplified Polymorphic DNA (RAPD) and Simple Sequence Repeats (SSR). Seventeen recommended rubber clones were included as references. The clones SK3 and SK1 were closely related to RRIM 600 with similarity coefficients of 0.891 and 0.809, while NK1 and T2 were closely related to RRIT 250 (0.836) and RRIC 110 (0.864), respectively.

show abstract

“…It calculated from SSR data ranged from 0.740 to 0.887 with a mean GD-0.839 The application of co-dominant SSR markers has allowed the evaluation of heterozigosity (4).…”

Section: Characterization Evaluation and Monitoringmentioning

confidence: 99%