Author’s correction: Characterization and Distribution of Agar-degrading &lt;i&gt;Steroidobacter agaridevorans&lt;/i&gt; sp. nov., Isolated from Rhizosphere Soils

Ikenaga, Makoto; Kataoka, Machi; Yin, Xuan; Murouchi, Aya; Sakai, Masao

doi:10.1264/jsme2.me20136e

Cited by 4 publications

(5 citation statements)

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“…S3c-f). This phenomenon was not consistent with previous studies [2,6], showing that two isolates of the genus Steroidobacter displayed remarkably improved growth when cultivated with the metabolites produced by bacteria belonging to the order Rhizobiales. This suggested that strain S1-65 T survived in co-evolved microbial communities with structures distinct from where those two isolates were isolated, leading to different microbial interaction patterns.…”

Section: Detection Of Social Interactionscontrasting

confidence: 98%

“…cummioxidans' 35Y (data adapted from [5]); 3，'S. agaridevorans' SA29-B (data adapted from [6]); 4, S. agariperforans KA5-B T (data adapted from [2]); 5, 'S. flavus' CPCC 100154 (data adapted from [4]); 6, S. soil JW-3 T (data adapted from [3]); 7, S. denitrifcans FS T (data adapted from [1]).…”

Section: Table 1 Differential Characteristics Between Strain S1-65 T and Closely Related Species In The Genus Steroidobactermentioning

confidence: 99%

“…ISP9 supplemented with 1 % glucose served as a positive control. Polysaccharide degradation capabilities were tested following the method described by Ikenaga et al [6]. Other physiological and biochemical properties of strains S1-65 T and KA5-B T were further tested using the API 20 NE systems (bioMérieux), according to the manufacturer's instructions.…”

Section: Morphology and Physiologymentioning

confidence: 99%

“…Strains: 1, S1-65 T (data from this study); 2, 'S. agaridevorans' SA29-B (data adapted from [6]); 3, S. agariperforans KA5-B T (data adapted from [2]); 4, S. soil JW-3 T (data adapted from [3]); 5, S. denitrifcans FS T (data adapted from [1]); 6, 'S. flavus' CPCC 100154 (data adapted from [4]).…”

Section: Table 2 Cellular Fatty Acid Composition Of Strain S1-65 T and Closely Related Species In The Genus Steroidobactermentioning

confidence: 99%

“…'Steroidobacter flavus' CPCC 100154 [4] and 'Steroidobacter cummioxidans' 35Y [5] have also been proposed, but not validly published. Recently, another novel species, 'Steroidobacter agaridevorans' SA29-B, was published by Ikenaga et al [6], where it was experimentally shown that diffusible metabolites from companion bacteria belonging to the order Rhizobiales remarkably enhanced the regular growth of the strain. S. agariperforans KA5-B T was also observed to show commensal interactions with bacteria belonging to the same order [2], suggesting potential ecological functions of species in this genus impacting and regulating micro-environments in plant rhizospheres.…”

Section: Introductionmentioning

confidence: 99%

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Steroidobacter gossypii sp. nov., isolated from cotton field soil

Huang

Chen

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

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A Gram-negative bacterium, designated S1-65T, was isolated from soil samples collected from a cotton field located in the Xinjiang region of PR China. Results of 16S rRNA gene sequence analysis revealed that strain S1-65T was affiliated to the genus Steroidobacter with its closest phylogenetic relatives being ‘Steroidobacter cummioxidans’ 35Y (98.4 %), ‘ Steroidobacter agaridevorans ’ SA29-B (98.3 %) and Steroidobacter agariperforans KA5-BT (98.3 %). 16S rRNA-directed phylogenetic analysis showed that strain S1-65T formed a unique phylogenetic subclade next to ‘ S. agaridevorans ’ SA29-B and S. agariperforans KA5-BT, suggesting that strain S1-65T should be identified as a member of the genus Steroidobacter . Further, substantial differences between the genotypic properties of strain S1-65T and the members of the genus Steroidobacter , including average nucleotide identity and digital DNA–DNA hybridization, resolved the taxonomic position of strain S1-65T and suggested its positioning as representing a novel species of the genus Steroidobacter . The DNA G+C content of strain S1-65T was 62.5 mol%, based on its draft genome sequence. The predominant respiratory quinone was ubiquinone-8. The main fatty acids were identified as summed feature 3 (C16:1ω6c/C16:1ω7c), C16 : 0 and iso-C15 : 0. In addition, its polar lipid profile was composed of aminophospholipid, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. Here, we propose a novel species of the genus Steroidobacter : Steroidobacter gossypii sp. nov. with the type strain S1-65T (=JCM 34287T=CGMCC 1.18736T).

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Section: Detection Of Social Interactionscontrasting

confidence: 98%