2009
DOI: 10.1264/jsme2.me09120
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Bacterial Population Dynamics in a Reverse-Osmosis Water Purification System Determined by Fluorescent Staining and PCR-Denaturing Gradient Gel Electrophoresis

Abstract: The bacterial population dynamics in an industrial scale reverse-osmosis (RO) water purification system were analyzed by fluorescent staining methods and denaturing gradient gel electrophoresis (DGGE). Bacterial numbers increased with storage in a tank, and bacterial diversity changed during the water purification process. A DNA sequence-based analysis of the major bands on the DGGE gel revealed that Simonsiella sp. (Betaproteobacteria) was abundant in the source water (activated sludge-treated waste effluent)… Show more

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Cited by 21 publications
(11 citation statements)
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“…Thus, this simple method is suitable for analyzing many samples simultaneously. TaqGold is often used for PCR amplification of eubacterial 16S rRNA genes from freshwater samples 10,11,14,15) ; however, this DNA polymerase was not very effective in our study.…”
Section: Resultsmentioning
confidence: 59%
See 1 more Smart Citation
“…Thus, this simple method is suitable for analyzing many samples simultaneously. TaqGold is often used for PCR amplification of eubacterial 16S rRNA genes from freshwater samples 10,11,14,15) ; however, this DNA polymerase was not very effective in our study.…”
Section: Resultsmentioning
confidence: 59%
“…In particular, denaturing gradient gel electrophoresis (DGGE) 9) has been used to determine the genetic diversity of natural microbial communities and to identify the phylogenetic affiliation of community members. [10][11][12] Polymerase chain reaction (PCR)-amplified DNA fragments of the eubacterial 16S ribosomal RNA (rRNA) gene that have the same length but different sequences can be separated by DGGE. However, PCR-DGGE analysis is often difficult to implement with freshwater samples from eutrophic environments that contain PCR-inhibitors, such as humic acid.…”
mentioning
confidence: 99%
“…uidaho.edu/) and the result was "uncultured bacterium." More than 90% of bacteria in aquatic environments are difficult to culture under conventional conditions [1][2][3] and this result was convincing.…”
Section: Bacterial Community Profiling In Hydroponics Solutionmentioning
confidence: 91%
“…Microorganisms that survive the water purification process can become a source of microbial contamination. 1) Bacterial number and their community structure in freshwater should be determined as quickly as possible, and "real-time" and "onsite" microbiological methods are therefore required.…”
mentioning
confidence: 99%
“…Briefly, bacterial cells were trapped by vacuum onto a black polycarbonate filter (pore size: 0.2 μm; Advantec, Tokyo, Japan), and stained in buffer containing 2 μg mL −1 of PI (concentration of stock solution in sterilized water: 500 μg mL −1 ) and 1 μg mL −1 of 4',6-diamidino-2-phenylindole (DAPI; concentration of stock solution in sterilized water: 10 μg mL −1 ) for 5 min at room temperature. Bacterial cells were enumerated using an epifluorescence microscope (E400, Nikon, Tokyo, Japan) (1,5,9). Damage to the cell membranes of bacteria appeared as red-fluorescence and was enumerated under green-light excitation.…”
mentioning
confidence: 99%