The Hetao irrigation region is located in Inner Mongolia, China, within a dry and semi-dry region. This region suffers from poor agricultural productivity and environmental damage due to the presence of saline soil. To explore the growth of salty lands using a more environmentally friendly method, this research employed three eco-conscious amendments to improve the soil. These include flue gas desulfurization gypsum (S), humic acid (H), and biochar (C). During a two-year study, the amendments were utilized to enhance the soil quality for planting sunflowers. Humic acid was used prior to every seedling season, whereas the remaining two substances were only used once. These additions increased the soil’s water-holding capacity, reduced soil salinity during sunflower growth, and improved the macroaggregate proportion. The most effective treatment for decreasing the soil’s salt content after the seedling stage was the application of humic acid (0.6 t ha−1). Biochar (15 t ha−1) decreased the soil’s bulk density (from 1.49 to 1.34 g cm−3) and mostly increased the sunflower seed yield up to 3133−3964 kg ha−1. Humic acid addition significantly increased the aggregate (>0.25 mm) content up to 27.88% after the experiment, but it led to a lower seed yield (2607−3686 kg ha−1). In 2019, the temperature was lower compared to 2018, which may have led to a reduction in the yield. However, these three amendments could potentially increase yields by more than conventional methods. These three environmentally friendly amendments are useful for improving saline soil and increasing yields. More studies are required to understand their impacts on larger areas and over extended periods.