Background: Comparative analysis of essential amino acids and fatty acid of enriched and unenriched Artemia spp. collected from Wadi El Natrun, Elbeheira, Egypt, was investigated. Results: The obtained results indicated that Leucine recorded the highest concentration (17.22%, 11.4%) in unenrichment A. tunisiana and A. franciscana, respectively followed by arginine (10.31%, 9.6%); however, glutamic acid recorded the lowest concentration (0.05%) in A. tunisiana. Statistical analysis showed no significant differences in some amino acid concentrations (P < 0.001) in both A. tunisiana and A. franciscana as arginine, valine, proline, and aspartic acid. Other amino acids were highly significantly fluctuated as glycine, leucine, histidine, phenylalanine, glutamic, and tyrosine; they were high in A. franciscana. Aspartic acid was significantly higher in unenrichment nauplii. Regarding the comparison between A. franciscana and enrichment A. tunisiana, the data showed non-significant improvement for the majority of the recorded amino acids. The analysis of unsaturated fatty acids n-3 and n-6 families after 18 and 24 h of enrichment Artemia was achieved. The composition of unsaturated fatty acids was significantly increased after enrichment to 79.7 mg/g DW instead of 46.5 in newly hatched nauplii. Saturated fatty acids were also significantly increased from 20 to 25.28 mg/g DW. The enrichment process was significant (P < 0.001) in nauplii enriched with fatty acids for 18 h. The more pronounced effect of duration was the amount of energy as it was 33.17 kJ/g after 18 h, while it was 45.693 kJ/g after 24 h incubation. The ratio of ascorbic acid, due to Artemia enrichment by vitamin C for 24 h, was increased from 853 to 3227 μg/g dry weight after enrichment. Conclusion: To conclude, enrichment with cod liver oil and vitamin C obviously affected the chemical composition of local Egyptian Artemia (A. tunisiana).