“…Thus, we re-analyzed the expression of genes and splice isoforms involved in cell-cell adhesion and signaling using a previously generated RNA-seq dataset of E10.5 wild-type and LgDel CNgV transcriptomes from five biological replicates of pooled ganglia from multiple embryos and litters (
Maynard et al, 2020a ). We defined several sets of cell adhesion or cell-cell interaction genes: Notch and related factors (
Siebel and Lendahl, 2017 ); Connexin ( Gja ) gap junction subunits (
Swayne and Bennett, 2016 ); Cxcl ligands and the Cxcr4 receptor (
Kawaguchi et al, 2019 ); Wnt ligands/receptors (
Steinhart and Angers, 2018 ); and cadherin (Cdh)/catenin (Ctn) mediators ( Brault et al, 2001 ;
Shiau and Bronner-Fraser, 2009 ;
Wu and Taneyhill, 2019 ). Consistent with our expression level analysis for all wild-type versus LgDel CNgV transcripts (
Maynard et al, 2020a ), 22/22 Notch-related, 10/12 Gja, and 3/4 Cxcl/Cxcr genes had higher coefficients of variation (CVs) in LgDel versus wild-type CNgV; however, none were differentially expressed (
…”