A consensus virtual screening protocol has been applied to ca. 2000 approved drugs to
seek inhibitors of the main protease (M
pro
) of SARS-CoV-2, the virus
responsible for COVID-19. 42 drugs emerged as top candidates, and after visual analyses
of the predicted structures of their complexes with M
pro
, 17 were chosen for
evaluation in a kinetic assay for M
pro
inhibition. Remarkably 14 of the
compounds at 100-μM concentration were found to reduce the enzymatic activity and
5 provided IC
50
values below 40 μM: manidipine (4.8 μM),
boceprevir (5.4 μM), lercanidipine (16.2 μM), bedaquiline (18.7 μM),
and efonidipine (38.5 μM). Structural analyses reveal a common cloverleaf pattern
for the binding of the active compounds to the P1, P1′, and P2 pockets of
M
pro
. Further study of the most active compounds in the context of COVID-19
therapy is warranted, while all of the active compounds may provide a foundation for
lead optimization to deliver valuable chemotherapeutics to combat the pandemic.