“…Because of our interest in the full potential repertoire of influenza-specific CD4 T cells, our laboratory has used unbiased epitope scanning methods to identify the entire array of peptides recognized by CD4 T cells in the primary response in mice to influenza infection or vaccination. These studies have involved a diverse set of mouse strains, chosen in part to explore the role of MHC (Major Histocompatibility Complex) class II polymorphism in selection of the immunodominance hierarchy [33,34], the relationship between epitope selection in CD4 T cell responses to infection vs. vaccination [35], CD4 T cell epitope selection during homing to the lung after infection [36,37], partitioning of CD4 T cells into follicular helper cells versus effector cell lineages after infection and vaccination [38], and epitope mapping for identification of human CD4 T cell epitopes via HLA-DR transgenic mice [39,40]. Collectively, these studies have revealed a tremendous breadth in the CD4 T cell response to influenza that includes specificities derived from HA, NA, M1, NP, and the polymerase proteins.…”