2011
DOI: 10.1590/s1677-04202011000200001
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Challenges in proteome analyses of tropical plants

Abstract: Genome sequencing of various organisms allow global analysis of gene expression, providing numerous clues on the biological function and involvement in the biological processes studied. Proteomics is a branch of molecular biology and biotechnology that has undergone considerable development in the post-genomic era. Despite the recent significant advancements in proteomics techniques, still there is much to be improved. Due to peculiarities to the plant kingdom, proteomics approaches require adaptations, so as … Show more

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Cited by 16 publications
(9 citation statements)
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“…In both plant groups most of the DEPs were multifunctional. In KNO 3 + plants, the major functional BP categories were single-organism and metabolic processes and cellular processes (30 out of 43 DEPs in each category), followed by cellular processes (27) and response to stimulus (22). For MF, catalytic activity (31), binding proteins (23), and antioxidant enzymes (9) were the most abundant groups, whereas cell (28), organelle (19), and membrane (14) proteins accounted for the most abundant CC proteins.…”
Section: Functional Annotation and Classification Of The Identified Pmentioning
confidence: 99%
See 1 more Smart Citation
“…In both plant groups most of the DEPs were multifunctional. In KNO 3 + plants, the major functional BP categories were single-organism and metabolic processes and cellular processes (30 out of 43 DEPs in each category), followed by cellular processes (27) and response to stimulus (22). For MF, catalytic activity (31), binding proteins (23), and antioxidant enzymes (9) were the most abundant groups, whereas cell (28), organelle (19), and membrane (14) proteins accounted for the most abundant CC proteins.…”
Section: Functional Annotation and Classification Of The Identified Pmentioning
confidence: 99%
“…Nevertheless, it is also noteworthy that the tolerance limits of the C. glauca ecotype used by Ngom et al [9] were lower than the limits of the C. glauca ecotype used in our studies [4,12,21], i.e., 200 mM vs. 600 mM NaCl. Systems biology approaches are the best way to thoroughly dissect the complex interactions within biological systems, and the pathways involved in stress adaptation, as well as to deepen our understanding of the expression patterns and functions of the response-associated genes and proteins [20,27]. For the investigation of the roles that proteins play in cell metabolism, the use of proteomics is essential.…”
Section: Introductionmentioning
confidence: 99%
“…These global studies, however, are still scarce for tropical and wild plants, which represents 2/3 of the total of World's green plants and are one of the most important, still largely untapped, repository of chemical structures important for pharmaceutical and cosmetic applications, as well as, for example, forestry and agronomy (Balbuena et al, 2011). Piper nigrum (black pepper), considered the "King of Spices" because of its economic importance and its ubiquitous culinary presence, had its transcriptome data from leaves and roots recently described (Gordo et al, 2012;Joy et al, 2013).…”
Section: Introductionmentioning
confidence: 99%
“…Organograma relacionando a sequência da função das "ômicas", genômica, transcritômica e proteômica. A genômica funcional engloba os estudos do transcriptoma e do proteoma (Figura adaptada deBalbuena et al, 2011).…”
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