2010
DOI: 10.1002/ibd.21043
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Characterization of single-nucleotide polymorphisms relevant to inflammatory bowel disease in commonly used gastrointestinal cell lines

Abstract: We have identified genotype variants in all analyzed cell lines. Some of them are functional and alter the response to drugs (MDR1) or affect bacterial recognition (TLR4, NOD2). Our results highlight that the genotype should not be neglected in experimental design when using model cell lines.

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Cited by 11 publications
(12 citation statements)
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“…Shed CL as well as the intestinal phospholipid barrier may represent another mechanism by which monophosphorylated family Bacteroidaceae-type LPS in the intestinal lumen due to significantly lower binding to LBP and transfer to CD14 (52) is neutralized before engagement of TLR4. In addition, both LBP and CD14 are made by intestinal epithelial cells (62,63), and evidence that they contribute to intestinal homeostasis has been reported (64,65). Furthermore, modulation of TLR4 activity by LPB may have some clinical utility in treating necrotizing enterocolitis (66).…”
Section: Discussionmentioning
confidence: 99%
“…Shed CL as well as the intestinal phospholipid barrier may represent another mechanism by which monophosphorylated family Bacteroidaceae-type LPS in the intestinal lumen due to significantly lower binding to LBP and transfer to CD14 (52) is neutralized before engagement of TLR4. In addition, both LBP and CD14 are made by intestinal epithelial cells (62,63), and evidence that they contribute to intestinal homeostasis has been reported (64,65). Furthermore, modulation of TLR4 activity by LPB may have some clinical utility in treating necrotizing enterocolitis (66).…”
Section: Discussionmentioning
confidence: 99%
“…SNPs can have an impact on gene expression as well as the biological function of protein, which leads to phenotypic consequences [57]. SNPs in the LPB gene are associated with susceptibility to sepsis and multiple organ dysfunction [58], [59].…”
Section: Discussionmentioning
confidence: 99%
“…The Caco-2 cell line and bacterial strains were cultured as described previously (4,11). Monolayers were seeded in 24-well tissue culture plates with 2 ϫ 10 5 cells/well and incubated for 14 days.…”
mentioning
confidence: 99%
“…Reverse transcription of 1.4 g of total RNA to cDNA was carried out using the SuperScript III first-strand synthesis super mix kit (Invitrogen, Auckland, New Zealand) and oligo(dT) 20 primers according to the standard protocol. Reactions were performed in 384-well plates as previously described (11), and the cDNA was amplified in an Applied Biosystems ABI PRISM 7900HT sequence detection system. The primers used for quantitative PCR (qPCR) are shown in Table 2.…”
mentioning
confidence: 99%