Characterization of the Complete Mitochondrial Genome of Arius dispar (Siluriformes: Ariidae) and Phylogenetic Analysis Among Sea Catfishes

Cui, Lei; Dong, Yan; Cao, Rongbo; Zhou, Xiaoyu; Lü, Songhui

doi:10.1007/s11802-020-4409-1

Cited by 2 publications

(4 citation statements)

References 41 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…All mitogenomes presented 22 tRNA genes, 13 PCGs, 2 rRNA genes, and a control region called the D-loop, which is consistent with other groups within the same family and even what is typically expected in vertebrates (Fig. 1) [4,[14][15][16]. The size of the mitochondrial genomes was also similar, with 16,709 bp for N. berneyi, N. graeffei, N. leptaspis, N. paucus, and N. midgleyi, 16,702 bp for N. utarus, 16,710 bp for N. aff.…”

Section: Resultssupporting

confidence: 85%

Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)

Pimentel,

da Silva,

Rodrigues-Oliveira

et al. 2023

Genomics Inform

View full text Add to dashboard Cite

The genus Neoarius, known as marine catfish, is a group of the family Ariidae, composed of 10 species found in Oceania. None of the species in this genus have their mitochondrial genome described, which is highly valuable in phylogenetic and molecular evolution studies. For the present work, eight species from the Neoarius genus were selected: Neoarius utarus, Neoarius midgleyi, Neoarius graeffei, Neoarius leptaspis, Neoarius berenyi, Neoarius paucus, Neoarius pectoralis, and Neoarius aff. graeffei. DNA sequences of the eight species were obtained through the NCBI Sequence Read Archive (SRA) database, and the mitochondrial genomes were assembled using the NOVOplasty tool on the Galaxy platform, subsequently annotated with the MitoAnnotator tool. We then utilized the protein-coding genes from the mitogenomes to estimate the phylogenetic relationships within the group, including seven additional mitogenomes available in the NCBI. In all species, the mitochondrial genomes presented 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and 1 D-loop.

show abstract

Section: Resultssupporting

confidence: 85%

Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)

Pimentel,

da Silva,

Rodrigues-Oliveira

et al. 2023

Genomics Inform

View full text Add to dashboard Cite

show abstract

“…Phylogenetic analyses consistently support the common ancestry of several groupings of siluroid lineages: Aspredinidae (banjo catfishes), Auchenipteridae (driftwood catfishes), and Doradidae (thorny catfishes)(Sullivan et al 2006(Sullivan et al , 2008Nakatani et al 2011;Q. Wang et al 2015;Rabosky et al 2018; Rivera-Rivera and Montoya-Burgos 2018;Cui et al 2020;Schedel et al 2022;Duong et al 2023); Clariidae (airbreathing catfishes) and Heteropneustes (airsac catfishes)(Mo 1991;Diogo 2004;Hardman 2005;Sullivan et al 2006;Nakatani et al 2011;Q. Wang et al 2015;J.…”

mentioning

confidence: 83%

“…For example, Cetopsidae (whale catfishes) are either deeply branching or specifically placed as the sister lineage of all other Siluroidei in many phylogenetic studies (Mo 1991;de Pinna 1993;Diogo 2004;Lundberg et al 2007; Q. Wang et al 2015;; Rivera-Rivera and Montoya-Burgos 2018; K. Schedel et al 2022;Duong et al 2023) Rabosky et al 2018;Cui et al 2020;Schedel et al 2022;Duong et al 2023).…”

Section: Synonyms Siluridaementioning

confidence: 99%

“…Wang et al 2015;J. Wang et al 2016;Rabosky et al 2018;Cui et al 2020;Schedel et al 2022;Duong et al 2023); the Madagascar endemic Anchariidae (Malagasy catfishes) and the marine Ariidae (sea catfishes) (de Pinna 1993;Sullivan et al 2006;J. Wang et al 2016); and the east Asian Cranoglanis (armorhead catfishes) and the North American Ictaluridae (bullhead catfishes)(Diogo 2004;Hardman 2005;Sullivan et al 2006;Nakatani et al 2011;Q.…”

mentioning

confidence: 99%

See 1 more Smart Citation

Phylogenetic Classification of Living and Fossil Ray-Finned Fishes (Actinopterygii)

Near,

Thacker

2024

Bulletin of the Peabody Museum of Natural History

View full text Add to dashboard Cite

Classification of the tremendous diversity of ray-finned fishes (Actinopterygii) began with the designation of taxonomic groups on the basis of morphological similarity. Starting in the late 1960s morphological phylogenetics became the basis for the classification of Actinopterygii but failed to resolve many relationships, particularly among lineages within the hyperdiverse Percomorpha. The introduction of molecular phylogenetics led to a dramatic reconfiguration of actinopterygian phylogeny. Refined phylogenetic resolution afforded by molecular studies revealed an uneven diversity among actinopterygian lineages, resulting in a proliferation of redundant group names in Linnean-ranked classifications. Here we provide an unranked phylogenetic classification for actinopterygian fishes based on a summary phylogeny of 830 lineages of rayfinned fishes that includes all currently recognized actinopterygian taxonomic families and 287 fossil taxa. We provide phylogenetic definitions for 90 clade names and review seven previously defined names. For each of the 97 clade names, we review the etymology of the clade name, clade species diversity and constituent lineages, clade diagnostic morphological apomorphies, review synonyms, and provide a discussion of the clade's nomenclatural and systematic history. The new classification is free of redundant group names and includes only one new name among the 97 clade names we review and describe, yielding a comprehensive classification that is based explicitly on the phylogeny of ray-finned fishes that has emerged in the 21st century and rests on the foundation of the previous 200 years of research on the systematics of ray-finned fishes.

show abstract

Characterization of the Complete Mitochondrial Genome of Arius dispar (Siluriformes: Ariidae) and Phylogenetic Analysis Among Sea Catfishes

Cited by 2 publications

References 41 publications

Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)

Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)

Phylogenetic Classification of Living and Fossil Ray-Finned Fishes (Actinopterygii)

Contact Info

Product

Resources

About