Environmentally friendly metal–organic frameworks (MOFs) have gained considerable attention for their potential use as heterogeneous catalysts. Herein, two CuI‐based MOFs, namely, [Cu4Cl4L]⋅CH3OH⋅1.5 H2O (1‐Cl) and [Cu4Br4L]⋅DMF⋅0.5 H2O (1‐Br), were assembled with new functionalized thiacalix[4]arenes (L) and halogen anions X− (X=Cl and Br) under solvothermal conditions. Remarkably, catalysts 1‐Cl and 1‐Br exhibit great stability in aqueous solutions over a wide pH range. Significantly, MOFs 1‐Cl and 1‐Br, as recycled heterogeneous catalysts, are capable of highly efficient catalysis for click reactions in water. The MOF structures, especially the exposed active CuI sites and 1D channels, play a key role in the improved catalytic activities. In particular, their catalytic activities in water are greatly superior to those in organic solvents or even in mixed solvents. This work proposes an attractive route for the design and self‐assembly of environmentally friendly MOFs with high catalytic activity and reusability in water.