2016
DOI: 10.1155/2016/3262813
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Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison

Abstract: This paper constructed a novel injection from a DNA sequence to a 3D graph, named circular helix-like curve (CHC). The presented graphical representation is available for visualizing characterizations of a single DNA sequence and identifying similarities and differences among several DNAs. A 12-dimensional vector extracted from CHC, as a numerical characterization of CHC, was applied to analyze phylogenetic relationships of 11 species, 74 ribosomal RNAs, 48 Hepatitis E viruses, and 18 eutherian mammals, respec… Show more

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Cited by 3 publications
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“…2 . As seen, the similar cluster pairs are respectively as Human-Gorilla(same cluster result in 1 , 2 , 10 , 40 , 47 , 48 ), Rat-Mouse(same result in 10 , 49 ), Lemur-Rabbit(same cluster result in 10 ), Goat-Bovine(same cluster result in 10 , 33 , 40 , 47 49 ), Human-Gorilla-Chimpanzee (same cluster result in 1 , 10 , 33 , 40 , 46 , 48 , 49 ).
Figure 2 Cluster dendrogram.
…”
Section: Resultsmentioning
confidence: 80%
“…2 . As seen, the similar cluster pairs are respectively as Human-Gorilla(same cluster result in 1 , 2 , 10 , 40 , 47 , 48 ), Rat-Mouse(same result in 10 , 49 ), Lemur-Rabbit(same cluster result in 10 ), Goat-Bovine(same cluster result in 10 , 33 , 40 , 47 49 ), Human-Gorilla-Chimpanzee (same cluster result in 1 , 10 , 33 , 40 , 46 , 48 , 49 ).
Figure 2 Cluster dendrogram.
…”
Section: Resultsmentioning
confidence: 80%