2019
DOI: 10.1038/s41467-019-08593-4
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Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy

Abstract: Genomic changes observed across treatment may result from either clonal evolution or geographically disparate sampling of heterogeneous tumors. Here we use computational modeling based on analysis of fifteen primary breast tumors and find that apparent clonal change between two tumor samples can frequently be explained by pre-treatment heterogeneity, such that at least two regions are necessary to detect treatment-induced clonal shifts. To assess for clonal replacement, we devise a summary statistic based on w… Show more

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Cited by 48 publications
(53 citation statements)
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“…Alternatively, COBRAs that target two different tumor antigens could address the problem of acquired resistance due to the heterogeneous nature of protein expression within human tumors. [48][49][50][51][52][53] To address this problem, COBRAs would contain two tumor-targeting sdAbs, each of which is able to induce potent T cell engagement alone. Such molecules would exert anti-tumor activity on tumor cells that express either antigen, and, as a result, would be expected to have activity on a broader range of tumors cells than COBRAs that target a single antigen.…”
Section: Discussionmentioning
confidence: 99%
“…Alternatively, COBRAs that target two different tumor antigens could address the problem of acquired resistance due to the heterogeneous nature of protein expression within human tumors. [48][49][50][51][52][53] To address this problem, COBRAs would contain two tumor-targeting sdAbs, each of which is able to induce potent T cell engagement alone. Such molecules would exert anti-tumor activity on tumor cells that express either antigen, and, as a result, would be expected to have activity on a broader range of tumors cells than COBRAs that target a single antigen.…”
Section: Discussionmentioning
confidence: 99%
“…However, T-DM1 plus pertuzumab was found not to be superior to trastuzumab plus taxane (the standard of care at trial initiation). While HER2 heterogeneity may explain attenuated clinical response rates in at least some patients with HER2þ breast cancer treated with T-DM1 (31)(32)(33)(34)(35) another compelling rationale is that T-DM1 doses simply were not high enough to fully-enable trastuzumab functions that meaningfully contribute to disease control (9). Our data suggest that CAT-01-106, with its superior tolerability and stability, might provide a solution to this problem and thus potentially enable better treatment outcomes and improved quality of life for patients.…”
Section: Discussionmentioning
confidence: 99%
“…Moreover, randomized trials of T-DM1 in gastric cancer (GATSBY trial) also failed to demonstrate superior efficacy compared with a taxane among 415 patients with previously-treated HER2 þ locally advanced or metastatic gastric or gastroesophageal junction adenocarcinoma treated in the second-line (30). Emerging clinical data strongly suggests that one mode of failure for T-DM1 for a fraction of patients in these studies is intratumoral HER2 heterogeneity (31)(32)(33)(34)(35)(36). Nonetheless, these outcomes may also reflect the fact that T-DM1, while maintaining trastuzumab effector functions, may not adequately enable those functions in vivo due to toxicity-related dosing constraints (9).…”
Section: Introductionmentioning
confidence: 99%
“…The geographical expansion of mutant subclones was often confined to 1-3 adjacent regions, but interestingly in some cases, mutationally distinct subclones were found to be growing admixed with one another. Cases studied pre-and post-neoadjuvant chemotherapy or targeted therapy revealed evidence that treatment can dramatically alter the clonal make-up of a tumour [39,40].…”
Section: Subclonal Genomic Diversity In Primary Breast Cancermentioning
confidence: 99%
“…Pathologists already record the presence of mixed growth patterns or grades, or the diversity across a tumour for the expression of ER, PR, HER2. Comprehensive sequencing of the entire primary tumour to characterise the subclonal architecture of a mass is not feasible, but evidence suggests that sequencing of two different regions of the tumour provides meaningful information to record clonal heterogeneity and to identify targetable genomic alterations [40].…”
Section: Capturing Intra-tumour Heterogeneity In Tissue or Liquid Biopsymentioning
confidence: 99%