The enteric protozoan parasites
Giardia duodenalis
and
Cryptosporidium
spp. are common cause of diarrhea in pet dogs and cats, affecting primarily young animals. This comparative study evaluates the diagnostic performance of conventional and molecular methods for the detection of
G. duodenalis
and
Cryptosporidium
spp. infection in dogs and cats.
The compared diagnostic assays included merthiolate-iodine-formalin (MIF) method, lateral flow immunochromatography rapid test (ICT) and real-time PCR; using direct immunofluorescence assay (DFA) as golden standard. The study included the analysis of 328 fecal samples from different dog (
n
= 225) and cat (
n
= 103) populations.
According to DFA, the overall prevalence of
G. duodenalis
was 24.4% (80/328, 95% CI: 19.8–29.4), varying from 11.6% (12/103, 95% CI: 6.2–19.5) in cats to 30.2% (68/225, 95% CI: 24.3–36.7) in dogs. The overall prevalence of
Cryptosporidium
spp. was 4.0% (13/328, 95% CI: 2.1–6.7), varying from 2.9% (3/103, 95% CI: 0.6–8.3) in cats to 4.4% (10/225, 95% CI: 2.1–8.0) in dogs. MIF was only used for the detection of
G. duodenalis
, which was identified by this method in 22.7% of dogs and 7.8% of cats, respectively. DFA was the most sensitive technique for detecting
G. duodenalis
in samples from dogs and cats (
p
-value: < 0.001), followed by real-time PCR. Identification of
Cryptosporidium
infections was most effectively accomplished by the combination of DFA and PCR technique (
p
-value: < 0.001). In addition, epidemiological (sex, age, origin) and clinical (fecal consistency) variables were collected to assess their potential associations with an increased likelihood of infection by
G. duodenalis
and/or
Cryptosporidium
spp. Breeder dogs were more likely to harbor
G. duodenalis
infection (
p
-value: 0.004), whereas female cats were significantly more infected with
Cryptosporidium
(
p
-value: 0.003).
In conclusion, DFA (alone or in combination with PCR) has been identified as the most accurate and cost-effective method for detecting
G. duodenalis
and
Cryptosporidium
spp. in fecal samples from pet dogs and cats. This highlights their importance in both veterinary and clinical settings for enabling prompt treatment and preventing potential transmission to humans.
Supplementary Information
The online version contains supplementary material available at 10.1186/s12917-024-04297-0.