Comparison of the microbial community structure between inflamed and non‐inflamed sites in patients with ulcerative colitis

Hirano, Atsushi; Umeno, Junji; Okamoto, Yasuharu; Shibata, Hiroki; Ogura, Yoshitoshi; Moriyama, Tomohiko; Torisu, Takehiro; Fujioka, Shin; Fuyuno, Yuta; Kawarabayasi, Yutaka; Matsumoto, Takayuki; Kitazono, Takanari; Esaki, Motohiro

doi:10.1111/jgh.14129

Cited by 116 publications

(98 citation statements)

References 38 publications

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“…Patients with UC have an altered gut microbiome, commonly called dysbiosis. Microbiome alterations in UC are characterised by reduced alpha‐diversity combined with increases in the Proteobacteria phylum and decreases in the Firmicutes phylum . At genus level, Roseburia is reported to be decreased and Haemophilus increased .…”

Section: Introductionmentioning

confidence: 99%

Mucosal 5‐aminosalicylic acid concentration, drug formulation and mucosal microbiome in patients with quiescent ulcerative colitis

Olaisen

Spigset

Granlund

et al. 2019

Aliment Pharmacol Ther

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Summary Background 5‐aminosalicylic acid (5‐ASA) is the first‐line therapy for ulcerative colitis (UC). 5‐ASA acts locally in the colonic mucosa by numerous proposed mechanisms, and is metabolised by N‐acetyltransferase (NAT). Large variations in mucosal 5‐ASA concentrations have been reported, but the underlying mechanisms are not understood. Aim To study the relationship between 5‐ASA concentration, 5‐ASA formulation, NAT genotype and bacterial microbiome in patients with UC. Methods Patients with quiescent UC, using monotherapy of Mezavant (n = 18), Asacol (n = 14) or Pentasa (n = 10), 4.0‐4.8 g/day were included. 5‐ASA was measured in colonic mucosal biopsies and serum by ultra‐high performance liquid chromatography. NAT genotypes were determined by Sanger sequencing. Bacterial microbiome was sequenced from faeces and mucosa by 16S rRNA sequencing using Illumina Miseq. Results Mezavant provided the highest mucosal 5‐ASA levels (geometric mean 2.39 ng/mg), followed by Asacol (1.60 ng/mg, 33% lower, P = 0.50) and Pentasa (0.57 ng/mg, 76% lower, P = 0.033). Mucosal 5‐ASA concentration was not associated with NAT genotype, but serum 5‐ASA concentration and NAT1 genotype was associated (P = 0.044). Mucosal 5‐ASA concentration was positively associated with mucosal bacterial diversity (P = 0.0005) and bacterial composition. High mucosal 5‐ASA concentration was related to reduced abundance of pathogenic bacteria such as Proteobacteria, and increased abundance of several favourable bacteria such as Faecalibacterium. Conclusions Mucosal 5‐ASA concentration is positively associated with bacterial diversity and a mucosal bacterial composition that are perceived favourable in UC. Mezavant yielded higher mucosal 5‐ASA concentrations than Pentasa. 5‐ASA may have beneficial effects on the mucosal microbiome, and high concentrations possibly amend dysbiosis in UC.

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Section: Introductionmentioning

confidence: 99%

Mucosal 5‐aminosalicylic acid concentration, drug formulation and mucosal microbiome in patients with quiescent ulcerative colitis

Olaisen

Spigset

Granlund

et al. 2019

Aliment Pharmacol Ther

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“…Among the less‐abundant bacteria in the GI‐FL patients in this study, Prevotella spp were changed the most compared with the controls. Prevotella is an oral bacterium, and its abundance is reported to be reduced in inflammatory bowel diseases such as Crohn disease and ulcerative colitis Prevotella might suppress lymphocyte‐mediated inflammation.…”

Section: Discussionmentioning

confidence: 99%

“…Prevotella is an oral bacterium, and its abundance is reported to be reduced in inflammatory bowel diseases such as Crohn disease and ulcerative colitis. 14,26 Prevotella might suppress lymphocytemediated inflammation. Furthermore, Prevotella loescheii extracts are reported to inhibit proliferation of human peripheral blood lymphocytes and a leukemic cell line.…”

Section: Discussionmentioning

confidence: 99%

“…16S rRNA gene sequencing was conducted as described previously with minor modifications. 14,15 Briefly, the extracted bacterial DNA was used as the template to amplify the V4 region of each 16S rRNA gene using the primer pair 515F/806R, which included the Illumina Flowcell adapter sequences. The reverse primer also contained a 12-base barcode sequence.…”

Section: S Rrna Gene Amplification and Sequencingmentioning

confidence: 99%

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Mucosal dysbiosis in patients with gastrointestinal follicular lymphoma

Zeze

Hirano

Torisu

et al. 2020

Hematological Oncology

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Because the pathogenesis of gastrointestinal follicular lymphoma (GI‐FL) remains unclear, no standardized treatment strategy has been established. Of the gastrointestinal lymphomas, gastric mucosa‐associated lymphoid tissue lymphomas are strongly associated with Helicobacter pylori; hence, the microbiota may be involved in GI‐FL pathogenesis. However, the association between GI‐FL and the microbiota remains uninvestigated. Therefore, we compared the mucosal microbiotas of GI‐FL patients with those of controls to identify microbiota changes in GI‐FL patients. Mucosal biopsy samples were obtained from the second portion of the duodenum from 20 GI‐FL patients with duodenal lesions and 20 controls. Subsequent 16S rRNA gene sequencing was performed on these samples. QIIME pipeline and LEfSe software were used to analyze the microbiota. The GI‐FL patients had significantly lower alpha diversity (P = .049) than did the controls, with significant differences in the microbial composition (P = .023) evaluated by the beta diversity metrics between the two groups. Comparing the taxonomic compositions indicated that the genera Sporomusa, Rothia, and Prevotella and the family Gemellaceae were significantly less abundant in the GI‐FL patients than in the controls. GI‐FL patients presented altered duodenal mucosal microbial compositions, suggesting that the microbiota might be involved in the GI‐FL pathogenesis.

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“…Microbacterium genus abundance was associated with different inflammatory disorders: otitis externa [28], noma [29], and bacteremia [30]. OTUs belonging to [Tissierellaceae] family were more abundant in ulcerative colitis sites [31].…”

Section: Discussionmentioning

confidence: 99%

Biliary microbiota and bile acids composition in cholelithiasis

Петров

Fernández-Peralbo²,

Derks

et al. 2018

Preprint

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BackgroundA functional interplay between BAs and microbial composition in gut is a well-documented phenomenon. In bile this phenomenon is far less studied and with this report we describe the interactions between the BAs and microbiota in this complex biological matrix.MethodologyThirty-seven gallstone disease patients of which twenty-one with Opisthorchis felineus infection were enrolled in the study. The bile samples were obtained during laparoscopic cholecystectomy for gallstone disease operative treatment. Common bile acids composition were measured by LC-MS/MS using a column in reverse phase. For all patients gallbladder microbiota was previously analyzed with 16S rRNA gene sequencing on Illumina MiSeq platform. The associations between bile acids composition and microbiota were analysed.Principal findingsBile acids signature and O. felineus infection status exerts influence on beta-diversity of bile microbial community. Direct correlations were found between taurocholic acid, taurochenodeoxycholic acid concentrations and alpha-diversity of bile microbiota. Taurocholic acid and taurochenodeoxycholic acid both shows positive associations with the presence of Chitinophagaceae family, Microbacterium and Lutibacterium genera and Prevotella intermedia. Also direct associations were identified for taurocholic acid concentration and the presence of Actinomycetales and Bacteroidales orders, Lautropia genus, Jeotgalicoccus psychrophilus and Haemophilus parainfluenzae as well as for taurochenodeoxycholic acid and Acetobacteraceae family and Sphingomonas genus. There were no differences in bile acids concentrations between O. felineus infected and non-infected patients.Conclusions/SignificanceAssociations between diversity, taxonomic profile of bile microbiota and bile acids levels were evidenced in patients with cholelithiasis. Increase of taurochenodeoxycholic acid and taurocholic acid concentration correlates with bile microbiota alpha-diversity and appearance of opportunistic pathogens. Alteration of bile acids signature could cause shifts in bile microbial community structure.

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Comparison of the microbial community structure between inflamed and non‐inflamed sites in patients with ulcerative colitis

Abstract: Mucosal microbial dysbiosis occurs at both inflamed and non-inflamed sites in UC patients. The taxa showing altered abundance in UC patients might mediate colonic inflammation.

Cited by 116 publications

References 38 publications

Mucosal 5‐aminosalicylic acid concentration, drug formulation and mucosal microbiome in patients with quiescent ulcerative colitis

Mucosal 5‐aminosalicylic acid concentration, drug formulation and mucosal microbiome in patients with quiescent ulcerative colitis

Mucosal dysbiosis in patients with gastrointestinal follicular lymphoma

Biliary microbiota and bile acids composition in cholelithiasis

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