Complete genome sequence of Altererythrobacter dongtanensis KCTC 22672T, isolated from a tidal flat

Cheng, Hong; Wu, Yue‐Hong; Huo, Ying‐Yi; Zhou, Peng; Liu, Qian; Wang, Chunsheng; Xu, Xue-Wei

doi:10.1016/j.margen.2017.02.003

Cited by 4 publications

References 22 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

Tsuneonella

Zhou

2023

Bergey's Manual of Systematics of Archaea and Bacteria

View full text Add to dashboard Cite

Tsu.ne.o.nel'la. N.L. fem. dim. n. Tsuneonella , named in honor of Tsuneo Shiba who established genus Erythrobacter . Pseudomonadota / Alphaproteobacteria / Sphingomonadales / Erythrobacteraceae / Tsuneonella The members of the genus Tsuneonella have been isolated from various environments, including air, freshwater, sediment, and sea urchin. Cells are ovoid to rod‐shaped, non‐spore‐forming, Gram‐stain‐negative, and nonmotile. They are aerobic or facultatively aerobic and contain carotenoid pigments but not bacteriochlorophyll a . The predominant quinone is ubiquinone‐10, and the major fatty acid is C 18:1 ω7 c or summed feature 8 (C 18:1 ω7 c and/or C 18:1 ω6 c ). The major polar lipids include diphosphatidylglycerol (DPG) and phosphatidylethanolamine (PE). Based on phylogenic analysis of the core genome, the genus Tsuneonella represents a distinct lineage in the family Erythrobacteraceae of the class Alphaproteobacteria . DNA G + C content (mol%) : 60.5–67.0 (genome sequence). Type species : Tsuneonella dongtanensis Xu et al. 2020 VP (basonym: Altererythrobacter dongtanensis Fan et al. 2011 VP ).

show abstract

Tsuneonella

Zhou

2023

Bergey's Manual of Systematics of Archaea and Bacteria

View full text Add to dashboard Cite

show abstract

Combined application of rhamnolipid and agricultural wastes enhances PAHs degradation via increasing their bioavailability and changing microbial community in contaminated soil

Wang

Bao

Pan

et al. 2021

Journal of Environmental Management

View full text Add to dashboard Cite

Genomic-based taxonomic classification of the family Erythrobacteraceae

Sun

Chen

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

Self Cite

336

106

View full text Add to dashboard Cite

The family Erythrobacteraceae , belonging to the order Sphingomonadales , class Alphaproteobacteria , is globally distributed in various environments. Currently, this family consist of seven genera: Altererythrobacter , Croceibacterium , Croceicoccus , Erythrobacter , Erythromicrobium , Porphyrobacter and Qipengyuania . As more species are identified, the taxonomic status of the family Erythrobacteraceae should be revised at the genomic level because of its polyphyletic nature evident from 16S rRNA gene sequence analysis. Phylogenomic reconstruction based on 288 single-copy orthologous clusters led to the identification of three separate clades. Pairwise comparisons of average nucleotide identity, average amino acid identity (AAI), percentage of conserved protein and evolutionary distance indicated that AAI and evolutionary distance had the highest correlation. Thresholds for genera boundaries were proposed as 70 % and 0.4 for AAI and evolutionary distance, respectively. Based on the phylo-genomic and genomic similarity analysis, the three clades were classified into 16 genera, including 11 novel ones, for which the names Alteraurantiacibacter, Altericroceibacterium, Alteriqipengyuania, Alteripontixanthobacter, Aurantiacibacter, Paraurantiacibacter, Parerythrobacter, Parapontixanthobacter, Pelagerythrobacter, Tsuneonella and Pontixanthobacter are proposed. We reclassified all species of Erythromicrobium and Porphyrobacter as species of Erythrobacter . This study is the first genomic-based study of the family Erythrobacteraceae , and will contribute to further insights into the evolution of this family.

show abstract

Complete genome sequence of Altererythrobacter dongtanensis KCTC 22672T, isolated from a tidal flat

Cited by 4 publications

References 22 publications

Tsuneonella

Tsuneonella

Combined application of rhamnolipid and agricultural wastes enhances PAHs degradation via increasing their bioavailability and changing microbial community in contaminated soil

Genomic-based taxonomic classification of the family Erythrobacteraceae

Contact Info

Product

Resources

About