Complete Mitochondrial DNA Sequence of the Mucoralean Fungus
            <i>Absidia glauca</i>
            , a Model for Studying Host-Parasite Interactions

Ellenberger, Sabrina; Burmester, Anke; Wöstemeyer, Johannes

doi:10.1128/genomea.00153-16

Cited by 8 publications

(3 citation statements)

References 5 publications

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“…Besides tRNA genes, the numbers of unique ORFs, introns inserted in the protein-coding genes and intergenic spacers are different between two Bipolaris species. Compared with animal mitochondrial genomes, the atp9 is an additional gene occurring in many fungi (Paquin et al, 1997;Losada et al, 2014;Salavirta et al, 2014;Torriani et al, 2014;Lin et al, 2015;Ellenberger et al, 2016;Kanzi et al, 2016;Kang et al, 2017;Deng et al, 2018). However, the atp9 gene is missing in B. sorokiniana and in B. cookei.…”

Section: Discussionmentioning

confidence: 99%

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes

Song

Geng

2020

Front. Microbiol.

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A number of species in Bipolaris are important plant pathogens. Due to a limited number of synapomorphic characters, it is difficult to perform species identification and to estimate phylogeny of Bipolaris based solely on morphology. In this study, we sequenced the complete mitochondrial genome of Bipolaris sorokiniana, and presented the detailed annotation of the genome. The B. sorokiniana mitochondrial genome is 137,775 bp long, and contains two ribosomal RNA genes, 12 core proteincoding genes, 38 tRNA genes. In addition, two ribosomal protein genes (rps3 gene and rps5 gene) and the fungal mitochondrial RNase P gene (rnpB) are identified. The large genome size is mostly determined by the presence of numerous intronic and intergenic regions. A total of 28 introns are inserted in eight core proteincoding genes. Together with the published mitochondrial genome sequences, we conducted a preliminary phylogenetic inference of Dothideomycetes under various datasets and substitution models. The monophyly of Capnodiales, Botryosphaeriales and Pleosporales are consistently supported in all analyses. The Venturiaceae forms an independent lineage, with a distant phylogenetic relationship to Pleosporales. At the family level, the Mycosphaerellaceae, Botryosphaeriaceae. Phaeosphaeriaceae, and Pleosporaceae are recognized in the majority of trees.

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Section: Discussionmentioning

confidence: 99%

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes

Song

Geng

2020

Front. Microbiol.

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“… 2022 ), absidia glauca (NC_036158) (Ellenberger et al. 2016 ), gigaspora margarita (MN857242) (Venice et al. 2020 ), apophysomyces elegans (MT047458), paramicrosporidium saccamoebae (CM008827) (Quandt et al.…”

Section: Resultsmentioning

confidence: 99%

Mitochondrial genomic characteristics and phylogenetic analysis of a brewing fungus, Rhizopus microsporus Tiegh. 1875 (Mucorales: Rhizopodaceae)

Deng,

Chen,

Bao

et al. 2024

Mitochondrial DNA Part B

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Rhizopus microsporus Tiegh. 1875 is widely used in a variety of industries, such as brewing, wine making, baking, and medicine production, as it has the capability to break down proteins and generate surface-active agents. To date, the mitochondrial genome features of early evolved fungi from the Rhizopus genus have not been extensively studied. Our research obtained a full mitochondrial genome of R. microsporus species, which was 43,837 bp in size and had a GC content of 24.93%. This genome contained 14 core protein-coding genes, 3 independent ORFs, 7 intronic ORFs, 24 tRNAs, and 2 rRNA genes. Through the use of the BI phylogenetic inference method, we were able to create phylogenetic trees for 25 early differentiation fungi which strongly supported the major clades; this indicated that R. microsporus is most closely related to Rhizopus oryzae .

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“… 2022 ), Absidia glauca (NC_036158) (Ellenberger et al. 2016 ), Apophysomyces elegans (MT047458), Rhizopus oryzae (CM022358), Zancudomyces culisetae (CM007644) (Nie et al. 2019 ), Parasitella parasitica (KM382275) (Ellenberger et al.…”

Section: Resultsmentioning

confidence: 99%

Characterization of the complete mitochondrial genome of Mucor indicus Lendn. 1930 (Mucorales: Mucoraceae), isolated from the wine fermentation system

Deng,

Chen,

Bao

et al. 2024

Mitochondrial DNA Part B

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Complete Mitochondrial DNA Sequence of the Mucoralean Fungus Absidia glauca , a Model for Studying Host-Parasite Interactions

Cited by 8 publications

References 5 publications

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes

Mitochondrial genomic characteristics and phylogenetic analysis of a brewing fungus, Rhizopus microsporus Tiegh. 1875 (Mucorales: Rhizopodaceae)

Characterization of the complete mitochondrial genome of Mucor indicus Lendn. 1930 (Mucorales: Mucoraceae), isolated from the wine fermentation system

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