Complete nucleotide sequence and organization of the mitochondrial genome of eri-silkworm, Samia cynthia ricini (Lepidoptera: Saturniidae)

Kim, Jongsun; Park, Jeong Sun; Kim, Min Jee; Kang, Pil Don; Kim, Seon Gon; Jin, Byung Rae; Han, Yeon Soo; Kim, Iksoo

doi:10.1016/j.aspen.2011.10.002

Cited by 77 publications

(87 citation statements)

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“…Two species of Lasiocampoidea were utilized as outgroups. GenBank accession numbers are as follows: Notonagemia analis scribae, KU934302 (the present study), Sphinx morio, KC470083 (Kim et al 2013); Manduca sexta, EU286785 (Cameron & Whiting 2008); Bombyx mandarina, AB070263 (Yukuhiro et al 2002); Rondotia menciana, KJ647172 ; Bombyx huttoni, KP216766 (Peng et al 2015); Bombyx mori, AF149768 (Unpublished); Actias artemis aliena, KF927042 (Park et al 2016); Samia cynthia ricini, JN215366 (Kim et al 2012); Saturnia boisduvalii, EF622227 (Hong et al 2008); Antheraea yamamai, EU726630 (Kim et al 2009); Eriogyna pyretorum, FJ685653 (Jiang et al 2009); Dendrolimus spectabilis, KM244678 (Tang et al 2014); and Apatelopteryx phenax, KJ508055 (Timmermans et al 2014). …”

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Complete mitochondrial genome of the hawkmoth Notonagemia analis scribae (Lepidoptera: Sphingidae)

Kim

2016

Mitochondrial DNA Part B

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Currently, the mitochondrial genome of only two species of Sphingidae have been completely sequenced. For the phylogenetic study of Bombycoidea (including Bombycidae, Saturniidae and Sphingidae) using mitochondrial genomes (mitogenomes), more species are required as a basis for future research. In the present study, we sequenced the complete mitogenome of the hawkmoth, Notonagemia analis scribae (Lepidoptera: Sphingidae), to enrich the Sphingidae database. The length of the N. a. scribae genome was 15,303 bp with a typical set of genes (13 protein-coding genes [PCGs], 2 rRNA genes, and 22 tRNA genes), and one major non-coding A + T-rich region. The COI gene had a CGA start codon, which is the start codon for this gene in the majority of lepidopteran species, whereas other PCGs began with ATN codons. A 318-bp A + T-rich region harbored the blocks of conserved sequences that are typically found in lepidopteran insects, excluding a poly-A stretch, which is typically found at the end of the A + T-rich region. Phylogenetic analysis using the 13 PCGs indicated that N. a. scribae grouped together with two within-familial species, Sphinx morio and Manduca sexta , with the highest nodal support both by Bayesian inference and maximum-likelihood methods, forming the Sphingidae monophyletic group.

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“…Subsequently, 26 short overlapping fragments were amplified using the long fragments as templates. All primers used were Lepidoptera-specific primers designed previously (Kim et al 2012).…”

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Complete mitochondrial genome of the hawkmoth Notonagemia analis scribae (Lepidoptera: Sphingidae)

Kim

2016

Mitochondrial DNA Part B

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“…Subsequently, 26 short overlapping fragments were amplified using the long fragments as templates. All primer used were Lepidopteraspecific primers designed previously (Kim et al 2012). …”

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Complete mitochondrial genome of the gelechioidHieromantis kurokoi(Lepidoptera: Stathmopodidae)

Park

Jeong

Kim

et al. 2016

Mitochondrial DNA Part B

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“…When we compared with other reported Lepidoptera family mitogenomes, it found an identical gene order and orientation of the mitochondrial genes of this species to other lepidopteran moths, including Tryporyza incertulas [19], Corcyra cephalonica [20], Adoxophyes honmai [21], Apocheima cinerarius [22], Amata emma [23], Attacus atlas [24], Bombyx mori [25], Caligula boisduvalii [26], Chilo auricilius [19], Diaphania pyloalis [27], Manduca sexta [9], Ostrinia nubilalis, Ostrinia furnacalis [28], Samia Cynthia ricini [29], and Sasakia funebris [30], among others. The typical lepidopteran arrangement of the tRNAs (tRNA-Met, tRNA-Ile, tRNA-Gln) was observed in the T. solanivora mitogenome but differs from the order found in ancient insects (Figure 3).…”

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Mitochondrial Genomes of Lepidopteran Insects Considered Crop Pests

Ramírez-Ríos¹,

Álvarez²,

Mejia³

2017

Lepidoptera

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In this chapter, the complete mitochondrial genome of Guatemalan potato moth, Tecia solanivora (Povolny, 1973) (Lepidoptera: Gelechiidae) is presented as a model to understand how to characterize and study a mitogenome in insects. It was sequenced, analyzed, and compared with other lepidopteran insects. T. solanivora mitogenome is a circular double-stranded molecule, typically found in insects and containing 37 genes, all them well described over the other lepidopteran mitogenomes sequenced. Interestingly, in this mitogenome was found a gene arrangement in the tRNA-Met gene different from the ancestral arrangement, but commonly present in insect mitogenomes. Other important characteristics are the high A + T-biased and negative AT-and GC-skews contents, but also unusual canonical start codons in 12 protein-coding genes and an incomplete stop codon in the cytochrome oxidase subunit II gene consisting of just a Thymine. Another common feature shared with lepidopteran mitogenomes is the A + T-rich region. It is characterized by having 325 bb, the 'ATAGA' motif, a 17 bp poly (T) stretch and a (AT) 8 element preceded by the 'ATTTA' motif. Likewise, this mitogenome has 21 intergenic spacer regions. In addition, an update about other recent mitogenomes research done mainly over lepidopteran insects considered crop pests is presented. On the other hand, a novel development based on induced mutations by CRISPR-Cas9 in the mitogenomes seeking applicable capability for pest control is shown. The utility of this study is to improve scientific databases and support future studies of population genetic in lepidopteran.

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Complete nucleotide sequence and organization of the mitochondrial genome of eri-silkworm, Samia cynthia ricini (Lepidoptera: Saturniidae)

Cited by 77 publications

References 40 publications

Complete mitochondrial genome of the hawkmoth Notonagemia analis scribae (Lepidoptera: Sphingidae)

Complete mitochondrial genome of the hawkmoth Notonagemia analis scribae (Lepidoptera: Sphingidae)

Complete mitochondrial genome of the gelechioidHieromantis kurokoi(Lepidoptera: Stathmopodidae)

Mitochondrial Genomes of Lepidopteran Insects Considered Crop Pests

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