The current COVID-19 pandemic has led to the introduction of various epidemiological measures, including the ban on public worship. The problem of closed churches has become an intensely debated subject across several countries and a hotly debated question in recent media discourse. This paper provides an analysis of the arguments presented on the subject of closed churches by the media in Slovakia and the Czech Republic. In addition to the detailed analysis of the argumentation used, it also presents a twofold comparison: arguments presented in liberal versus conservative media, and arguments presented in the Slovak media versus Czech media. Twenty-eight years ago, these two countries were part of one state and after the split, the countries became a model of a peaceful dissolution (the so-called ‘velvet divorce’). However, from a religious perspective, they are quite different: whereas Slovakia is one of the most Christian (Catholic) countries, the Czech Republic is one of the most atheist countries in Europe. Three research dimensions are presented as part of this study: (1) media argumentation on the problem of closed churches; (2) comparison of liberal versus conservative arguments; (3) comparison of the media coverage in a strongly Christian country versus a strongly atheist country.