2014
DOI: 10.1016/j.neuroimage.2014.06.032
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Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata

Abstract: We established a strategy to perform cross-validation of serial optical coherence scanner imaging (SOCS) and diffusion tensor imaging (DTI) on a postmortem human medulla. Following DTI, the sample was serially scanned by SOCS, which integrates a vibratome slicer and a multi-contrast optical coherence tomography rig for large-scale three-dimensional imaging at microscopic resolution. The DTI dataset was registered to the SOCS space. An average correlation coefficient of 0.9 was found between the co-registered f… Show more

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Cited by 65 publications
(72 citation statements)
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“…Histological images and patch‐wise metrics were co‐registered in Matlab to the corresponding MRI slices with a landmark‐guided nonlinear approach,36 which maximized the Dice coefficient37 between the outlines of the specimens in MRI and histology 38. Landmark points were drawn on the mean b = 0 image and on the downsampled histological images.…”
Section: Methodsmentioning
confidence: 99%
“…Histological images and patch‐wise metrics were co‐registered in Matlab to the corresponding MRI slices with a landmark‐guided nonlinear approach,36 which maximized the Dice coefficient37 between the outlines of the specimens in MRI and histology 38. Landmark points were drawn on the mean b = 0 image and on the downsampled histological images.…”
Section: Methodsmentioning
confidence: 99%
“…Neighboring fiber tracts with different orientations can be distinguished in tomographic optical slices, two-dimensional en face images and three-dimensional volumetric images (56,57). Furthermore, a combination of diffusion tensor imaging (DTI) and SOCS imaging can describe the orientation of nerve fiber tracts on postmortem human medulla (58,59). Figure 3 shows the en face optic axis orientation maps in fiber orientations of the coronal plane.…”
Section: Cerebral Vascular and Angiography Imaging With Oct-based Systemmentioning
confidence: 99%
“…Figure 3 shows the en face optic axis orientation maps in fiber orientations of the coronal plane. Different colors represent the different fiber directions as shown on the color wheel; the brightness of colors is determined by the en face retardant values (58).…”
Section: Cerebral Vascular and Angiography Imaging With Oct-based Systemmentioning
confidence: 99%
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“…As discussed earlier, researchers applying network models to EM, fluorescence imaging and MRI have illustrated such an approach. In the future, such frameworks will likely be amenable to direct integration and across-scale comparisons of fluorescence and diffusion-based MRI studies [77,78].…”
Section: Quantifying Modularity Of Neuronal Wiring Diagramsmentioning
confidence: 99%