Data from Development of a breast cancer risk prediction model incorporating polygenic risk scores and non-genetic risk factors for Korean women

Abstract

<div>AbstractBackground:<p>To develop a breast cancer prediction model for Korean women using published polygenic risk scores (PRS) combined with nongenetic risk factors (NGRF).</p>Methods:<p>Thirteen PRS models generated from single or multiple combinations of the Asian and European PRSs were evaluated among 20,434 Korean women. The AUC and increase in OR per SD were compared for each PRS. The PRSs with the highest predictive power were combined with NGRFs; then, an integrated prediction model was established using the Individualized Coherent Absolute Risk Estimation (iCARE) tool. The absolute breast cancer risk was stratified for 18,142 women with available follow-up data.</p>Results:<p>PRS<sub>38_ASN</sub>+PRS<sub>190_EB</sub>, a combination of Asian and European PRSs, had the highest AUC (0.621) among PRSs, with an OR per SD increase of 1.45 (95% confidence interval: 1.31–1.61). Compared with the average risk group (35%–65%), women in the top 5% had a 2.5-fold higher risk of breast cancer. Incorporating NGRFs yielded a modest increase in the AUC of women ages >50 years. For PRS<sub>38_ASN</sub>+PRS<sub>190_EB</sub>+NGRF, the average absolute risk was 5.06%. The lifetime absolute risk at age 80 years for women in the top 5% was 9.93%, whereas that of women in the lowest 5% was 2.22%. Women at higher risks were more sensitive to NGRF incorporation.</p>Conclusions:<p>Combined Asian and European PRSs were predictive of breast cancer in Korean women. Our findings support the use of these models for personalized screening and prevention of breast cancer.</p>Impact:<p>Our study provides insights into genetic susceptibility and NGRFs for predicting breast cancer in Korean women.</p></div>