Decoding the Arsenal: Protist Effectors and Their Impact on Photosynthetic Hosts

Abstract

Interactions between various microbial pathogens including viruses, bacteria, fungi, oomycetes and their plant hosts have traditionally been the focus of phytopathology. In recent years, a significant and growing interest in the study of eukaryotic microorganisms not classified among fungi or oomycetes has emerged. Many of these protists establish complex interactions with photosynthetic hosts, and understanding these interactions is crucial in understanding the dynamics of these parasites within traditional and emerging types of farming, including marine aquaculture. Many phytopathogenic protists are biotrophs with complex polyphasic life cycles, which makes them difficult or impossible to culture, a fact reflected in a wide gap in the availability of comprehensive genomic data when compared to fungal and oomycete plant pathogens. Furthermore, our ability to use available genomic resources for these protists is limited by the broad taxonomic distance that these organisms span, that makes comparisons with other genomic datasets difficult. The current rapid progress in genomics and computational tools for the prediction of protein functions and interactions is revolutionising the landscape in plant pathology. This is also opening novel possibilities, specifically for a deeper understanding of protist effectors. Tools such as Alphafold enable better and more targeted functional predictions of divergent protein sequences. In turn this allows to ask better biological questions and, coupled with innovative experimental strategies, will lead into a new era of effector research, especially for protists, to expand our knowledge on these elusive pathogens and their interactions with photosynthetic hosts.

Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae

“…The clubroot pathogen belongs to the highly diverse, unicellular eukaryotic group Rhizaria, within the class Phytomyxea and the order Plasmodiophorids—a group of poorly studied plant pathogenic protists ( Neuhauser et al 2014 ; Mukhopadhyay et al 2024 ). Due to the intracellular lifestyle and the soil-borne nature of Plasmodiophorid plant parasites Spongospora subterranea , Polymyxa betae , and P. brassicae , the extraction of high-quality DNA is challenging and often contains a high proportion of host DNA ( Ciaghi et al 2018 ; Decroës et al 2019 ; Stjelja et al 2019 ; Javed et al 2023 ).…”