Deoxyribonucleic Acid (DNA) Splicing System from Graph Theoretic Perspective

Ruslim, Nooradelena Mohd; Elizabeth, Marta; Yusof, Yudariah Mohammad; Mohamad, Mimi Mohaffyza; Adzhar, Noraziah

doi:10.1088/1742-6596/1988/1/012081

Cited by 5 publications

(3 citation statements)

References 9 publications

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“…Other than that, it also linked to cluster 5 that discussed on the mathematical approach in solving problems in splicing system. This is supported by comprehensive review conducted by Mohd Ruslim et al, [44] that gave an insightful overview on the adoption of graphical approach in DNA splicing system.…”

Section: Co-authorship (Cited Authors)mentioning

confidence: 66%

A Bibliometric Review on Deoxyribonucleic Acid (DNA) Splicing System

Nooradelena Mohd Ruslim,

Yuhani Yusof,

Mohd Sham Mohamad

et al. 2024

ARMNE

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This study objects to provide a communicative review for splicing system, focusing on deoxyribonucleic acid (DNA) published in journals and proceedings indexed by the Scopus database. The method of bibliometric analysis is used to describe and analyze the evolution of publication structure and its various co-relationships such as citation, co-citation, co-authorship, and co-occurrence, among the chosen 174 documents indexed by Scopus. This study gives some insightful direction of research where the most influential documents and authors were determined. Besides, the emerging of technologies in most of the research works conducted previously promote the hybridization of background of studies specifically in mathematics, biology, and computer science. The study is limited to English articles which was published by the Scopus database, ranging from the year of 1983 until 2023. The source is also limited to Scopus journals and proceedings only. As far as the authors are aware, this is the first study to address the splicing system topic from a bibliometric perspective. The authors believe that this bibliometric review will help scholars and researchers to stand firm bases regarding the scientific development of this field of study.

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Section: Co-authorship (Cited Authors)mentioning

confidence: 66%

A Bibliometric Review on Deoxyribonucleic Acid (DNA) Splicing System

Nooradelena Mohd Ruslim,

Yuhani Yusof,

Mohd Sham Mohamad

et al. 2024

ARMNE

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“…Previously, multiple researches were conducted by adopting various types of graphs either to present the splicing system or the splicing language. This can be seen from an exhaustive review of DNA splicing system from graph perspective conducted by Mohd Ruslim et al, [13], for instance, limit graph [14,15], de Bruijn graph [16] and cycle graph [17]. In this paper, the formation of splicing languages from the wet model is represented in directed splicing graph.…”

Section: Crick Complementarity Adenine (A) Bonds To Thymine (T) While...mentioning

confidence: 97%

Characterize Type of Splicing Languages via Directed Splicing Graph

Nooradelena Mohd Ruslim,

Yuhani Yusof,

Mohd Sham Mohamad

et al. 2024

ARASET

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A splicing system is a formal characterization of the ability to generate certain enzymatic activities acting on deoxyribonucleic acid (DNA) molecules. In this paper, the results from Laun’s experiment are used in characterizing the type of splicing languages. In the experiments, two initial strings are involved with different features on the selected restriction enzymes. Case I and Case II discussed in this paper show that the splicing languages obtained from these experiments are in adult and limit languages. Nevertheless, the result obtained in this paper is more precise in showing the type of splicing languages which is beyond adult and limit languages when presented via a directed splicing graph. The features of the restriction enzyme that affect the formation of active persistent language are investigated based on the results proposed by Yusof.

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“…These studies also adopted mathematical approaches in presenting their results; via limit adjacency matrix [8], de Bruijn graph [9], and automata diagram [10]. A comprehensive review [11] on the DNA splicing system from graph theoretic perspective showed that DNA is best presented in graphs, as shown in [12][13][14].…”

Section: Introductionmentioning

confidence: 99%

The Generalisations of n-Cutting Sites Splicing Languages via Yusof-Goode Splicing System using a Non-Palindromic Rule and Crossing Site

Mohd Ruslim,

Yusof,

Mohamad

et al. 2024

Mal. J. Fund. Appl. Sci.

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Yusof-Goode (Y-G) splicing system was introduced in the context of Formal Language Theory. Splicing system is a dry model that presents enzymatic activities between initial strings and restriction enzymes, while splicing language is the generated strings from the splicing system. Splicing language will yield either as new molecules or initial string itself, and can be either in adult or inert, limit or transient languages. In this paper, some mathematical results on generating and generalising the n-cutting sites splicing languages are established using a Y-G splicing system consisting of a single pattern of strings with non-palindromic rule and crossing site. Two lemmas are presented to discuss the Y-G splicing system when two and three cutting sites exist in a single pattern of string. Different characteristics concerning the features of left and right contexts are established. A theorem is then proposed based on the lemmas to generalise the n-cutting sites splicing languages resulting from a Y-G splicing system with a single pattern of string and a non-palindromic rule when n-cutting sites exist in a single pattern of string.

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Deoxyribonucleic Acid (DNA) Splicing System from Graph Theoretic Perspective

Cited by 5 publications

References 9 publications

A Bibliometric Review on Deoxyribonucleic Acid (DNA) Splicing System

A Bibliometric Review on Deoxyribonucleic Acid (DNA) Splicing System

Characterize Type of Splicing Languages via Directed Splicing Graph

The Generalisations of n-Cutting Sites Splicing Languages via Yusof-Goode Splicing System using a Non-Palindromic Rule and Crossing Site

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