Villosiclava virens
is the prevalent causative pathogen of rice false smut, a destructive rice disease. Mating-type genes play a vital role in the evolution of mating systems in fungi. Some fungi have lost
MAT1-1-3
, one of the mating-type genes, during evolution, whereas others still retain
MAT1-1-3
. However, how
MAT1-1-3
regulates the sexual development of heterothallic
V. virens
remains unknown. Here, we generated the
MAT1-1-3
mutants, which exhibited defects in vegetative growth, stress response, pathogenicity, sclerotia formation and fruiting body maturation. An artificial outcrossing inoculation assay showed that the Δ
mat1-1-3
mutant was unable to produce sclerotia. Unexpectedly, the Δ
mat1-1-3
mutant could form immature fruiting bodies without mating on potato sucrose agar medium (PSA) compared with the wild-type strain, most likely by activating the truncated
MAT1-2-1
transcription to regulate the sexual development. Moreover, RNA-seq data showed that knockout of
MAT1-1-3
results in misregulation of a subset of genes involved in sexual development, MAPK signaling, cell wall integrity, autophagy, epigenetic modification, and transcriptional regulation. Collectively, this study reveals that
MAT1-1-3
is required for asexual and sexual development, and pathogenicity of
V. virens
, thereby provides new insights into the function of mating-type genes in the fungi life cycle and infection process.