To evaluate the performance of the logistics safety standard system, we propose an evaluation framework based on the performance evaluation theory. First, we construct the performance evaluation indicator of the safety standard system for logistics enterprises. It is based on the existing performance evaluation indicator and combined with the construction goal of the logistics safety standard system. Second, we combine the triangular fuzzy number and prospect theory to determine the indicator state according to the characteristics of performance evaluation indicators. Then, we use the Choquet integral, fuzzy method, and Shapley value methods to evaluate the information, which considers the interaction of indicators. Third, we use the entropy and fuzzy analytic hierarchy process to determine the expert weight. The performance evaluation information of the logistic enterprise’s safety standard system is aggregated to obtain the assessment results. Finally, the proposed framework is validated by an example analysis. The results show that the proposed framework can be used to evaluate the performance of logistics enterprise safety standard systems.