ABSTRACT. We examined overlapping genomic clones containing the chicken T cell receptor (TCR) Dβ-Jβ-Cβ complex, which contains a single diversity segment, four joining segments and four exons that encode the constant region. This sequence comprised 18.3 kb. All four Jβ sequences possessed typical recombination signal sequences (RSS) with intervening 12-bp spacers at their 5'-ends and splice sites at their 3'-ends. No Jβ-pseudogenes were identified. TGTG sequences in the RSS heptamer sequences were well conserved, as is the case in mammals. A chicken repeat 1-like sequence was found in the intron region between Jβ-1336 and Cβ, and several small repeat sequences were identified in intron regions throughout this cloned genome. As germline sequences revealed complete J β sequences, the CDR3 (complementarity-determining region) sequences of TCRβ from non-immunized splenocytes were analyzed. Non-coding (N) and palindromic (P) nucleotides were frequently observed at the Dβ-Jβ recombination sites. There were differences in length of deletion at the 5'-end of each Jβ. Deletion of the 5'-end of Jβ-1280 was particularly short when compared with that of Jβ-1336, but there were no changes in the length of the CDR3 using any of the four Jβ sequences. KEY WORDS: chicken, D segment, J segment, recombination, TCR.J. Vet. Med. Sci. 66(12): 1509-1515, 2004 The expression of antigen-specific receptor genes is a key event in lymphocyte maturation. T cell receptors (TCR) exist as heterodimers, either TCR αβ or γδ, each of which is specific for peptide antigens associated with either MHC class I or class II molecules. During T cell development in the thymus, the functional diversity of the TCR gene is facilitated by somatic recombination of germline sequences from a limited number of variable (V)-and joining (J)-segments in the TCR α-and γ-chains, and V-, diversity (D)-and J segments in the TCR β-and δ-chains.The TCR αβ-and γδ-proteins of chickens are similar to those of mammals. Previous cDNA and partial genomic studies have found that the TCRβ locus has two types of major Vβ gene families (Vβ1, and Vβ2), one Dβ, four Jβ segments and one Cβ [5]. In contrast to the Ig gene, Vβ pseudogenes have not yet been identified, and the four Jβ segments are similar.V, D, and J segments are flanked by recombination signal sequences (RSS) that are composed of conserved heptamers and nonamers flanking non-conserved 12-to 23-bp spacers. These RSS sequences are recognized by the RAG1/2 protein, which is followed by the initiation of the gene recombination reaction. For chicken TCRβ genes, there is no information on the genome sequence of the four Jβ genes, their orientation, or the RSS sequences, with the exception of one Vβ 23-RSS and Jβ-1340 12-RSS [17]. Thus, the non-coding (N) and palindromic (P) sequences at the recombination sites have not yet been analyzed accurately.In this report, we describe the 18.3 kb genomic segment that contains the chicken T cell receptor Dβ-Jβ-Cβ complexes, and demonstrate that N and P nucleotides were observed at the...