Electron paramagnetic resonance (EPR) studies of succinate:ubiquinone oxidoreductase (SQR) from Paracoccus denitrificans have been undertaken in the purified and membrane-bound states. Spectroscopic "signatures" accounting for the three iron-sulfur clusters (2Fe-2S, 3Fe-4S, and 4Fe-4S), cytochrome b, flavin, and protein-bound ubisemiquinone radicals have been obtained in air-oxidized, succinate-reduced, and dithionite-reduced preparations at 4 -10 K. Spectra obtained at 170 K in the presence of excess succinate showed a signal typical of that of a flavin radical, but superimposed with another signal. The superimposed signal originated from two bound ubisemiquinones, as shown by spectral simulations. Power saturation measurements performed on the air-oxidized enzyme provided evidence for a weak magnetic dipolar interaction operating between the oxidized 3Fe-4S cluster and the oxidized cytochrome b. Power saturation experiments performed on the succinate-and dithionite-reduced forms of the enzyme demonstrated that the 4Fe-4S cluster is coupled weakly to both the 2Fe-2S and the 3Fe-4S clusters. Quantitative interpretation of these power saturation experiments has been achieved through redox calculations. They revealed that a spin-spin interaction between the reduced 3Fe-4S cluster and the cytochrome b (oxidized) may also exist. These findings form the first direct EPR evidence for a close proximity ( 2 nm) of the high potential 3Fe-4S cluster, situated in the succinate dehydrogenase part of the enzyme, and the low potential, low spin b-heme in the membrane anchor of the enzyme.Succinate:ubiquinone oxidoreductase, SQR, 1 is the only membrane-bound enzyme in the tricarboxylic acid cycle. As "complex II," it performs the two-electron oxidation of succinate to produce fumarate, while transferring the electrons to quinone (Q) to yield quinol (QH 2 ). The reverse process is mediated by quinol:fumarate oxidoreductases (QFR), which occur in anaerobic and some facultative organisms. The two enzymes are related and are capable of catalyzing their respective reverse reactions under suitable conditions (1, 2).SQR contains three or four polypeptides depending on the organism. The largest subunit, a flavoprotein, contains the dicarboxylate binding site and one flavin moiety (FAD); the latter is covalently bound in most cases. The iron-sulfur protein is intermediate in size and contains three iron-sulfur clusters of type 2Fe-2S, 4Fe-4S, and 3Fe-4S, often referred to as S-1, S-2, and S-3, respectively, in the case of SQR. These two hydrophilic subunits protrude into the cytosol (prokaryotic enzyme) or the mitochondrial matrix (eukaryotic enzyme), and together catalyze the succinate dehydrogenase activity of the enzyme. They are anchored to the membrane by one or two hydrophobic quinone polypeptides (QP), which may contain zero, one, or two b-heme(s). These anchoring subunits confer reactivity with the bound Qs; for SQR from bovine heart (3, 4) and a variety of higher plants (5), the existence of two Q sites has been established. S...