The gene ENOD40 is expressed at an early stage of root nodule organogenesis and has been postulated to play a central regulatory role in the Rhizobium-legume interaction. In vitro translation of soybean ENOD40 mRNA showed that the gene encodes two peptides of 12 and 24 aa residues (peptides A and B) that bind to sucrose synthase. Here we show that the small Cys-containing peptide A binds to sucrose synthase by disulfide bond formation, which may represent a novel form of posttranslational modification of this important metabolic enzyme. Assays using nanomolar concentrations of peptide A revealed that the monomeric reduced form of this peptide binds to purified sucrose synthase. Using a cysteinyl capture strategy combined with MALDI-TOF MS analysis we identified the Cys residue C264 of soybean sucrose synthase as the binding site of peptide A. Modification of sucrose synthase with ENOD40 peptide A activates sucrose cleavage activity whereas the synthesis activity of the enzyme is unaffected. The results are discussed in relation to the role of sucrose synthase in the control of sucrose utilization in nitrogen-fixing nodules. Ó 2004 Elsevier Inc. All rights reserved. The symbiotic interaction between leguminous plants and rhizobia results in the development of the nodule, a new organ on plant roots. In these nodules the bacteria are hosted intracellularly as bacteroids and find the ideal environment to fix atmospheric nitrogen. Nitrogen fixation is an energy-demanding process which is dependent on the supply of photosynthate. Sucrose, as the major end product of photosynthesis, is synthesized in leaves and is transported in the phloem to various sink tissues such as nodules. This disaccharide is cleaved by the homotetrameric enzyme sucrose synthase (SuSy) catalyzing the reversible, UDP-dependent cleavage of sucrose into UDP-glucose and fructose. This reaction is considered to function in vivo in the sucrose breakdown direction providing substrates for rapidly growing tissues and sink organs. SuSy is one of the most abundant proteins in mature legume nodules [1,2], and breakdown of sucrose is a key step in nitrogen fixation and a necessary prerequisite for normal nodule development and function [3].Due to the important role of SuSy in the control of sucrose utilization in sink tissues, the expression of SuSy genes is highly regulated on the transcriptional and translational levels [4]. Moreover, SuSy is posttranslationally modified by reversible protein phosphorylation [5,6], and the soluble form of SuSy can bind to the actin cytoskeleton in plants [7]. Recently, we reported direct binding of SuSy to peptide A (12 aa residues) and peptide B (24 aa residues) encoded by the early nodulin gene ENOD40 [8]. In addition to the two small peptides, the secondary structure of ENOD40 mRNA has been shown to be a key element in the signaling process underlying nodule organogenesis [9,10].