Background: To investigate the relationship between high-order aberration (HOA) changes and RCST/CT (residual corneal stroma thickness/corneal thickness) after femtosecond LASIK surgery.Methods: A total of 65 eyes from 39 patients with high myopia, who had femtosecond (FS) laser-assisted in situ keratomileusis (LASIK) surgery performed in our hospital, were included in this study. HOA and central corneal thickness were measured preoperatively and at 1 week, 1 month, and 3 months after FS-LASIK by Sirius Scheimpflug-Placido topography. Residual corneal stroma thickness (RCST) and ablation depth were measured during surgery. Results: Horizontal coma (Z 3 1 ), spherical aberration (Z 4 0 ), second horizontal coma (Z 5 1 ), second horizontal trefoil (Z 5 3 ), pentafoil (Z 5 5 ), second spherical aberration (Z 6 0 ), and total HOAs were significantly increased at 1 week, 1 month, and 3 months after surgery compared with the preoperative values (P<0.05), but no significant differences were found in horizontal trefoil (Z 3 3 ; P>0.05). Furthermore, Z 3 1 , Z 4 0 , and HOAs were significantly increased at 3 months post-surgery compared with the values at 1 week post-operation (P<0.05).Positive correlations were found between ablation depth and Z 6 0 at 1 week and 1 month after surgery (r=0.291 and 0.337, respectively; P<0.05). Ablation depth was positively correlated with Z 4 0 and Z 6 0 at 3 months after surgery (r=0.439 and 0.336, respectively; P<0.05). The RCST/CT was negatively correlated with Z 4 0 , Z 6 0 , and HOAs at 3 months after surgery (r=−0.322, −0.412, and −0.321, respectively; P<0.05). There were no significant correlations between Zernike coefficients in terms of high-order aberration, HOAs, and RCST/ CT at 1 week and 1 month post-surgery.Conclusions: Corneal HOAs in high myopia patients increased significantly after FS-LASIK surgery, and this was mainly observed as increases in coma and spherical aberration. The greater the ablation depth, the larger the influence on spherical aberrations. The greater the RCST/CT, the smaller the influence of HOAs on the cornea.