Land consolidation structure reflects land consolidation function, and studies about its spatio-temporal change and driving mechanism can serve for regional management and control land consolidation. At present, the analysis of regional differences, time changes, and driving factors of land consolidation type structure change is relatively lacking. Based on the data of provincial acceptance projects from 2000 to 2014, this paper analyzes the spatio-temporal change of rural land consolidation type structure in China, discusses the impact of relevant policies, and identifies the socio-economic driving factors in key regions by employing correlation analysis and the PLSR (partial least squares regression) method. The results showed that from 2000 to 2014, the proportional increase of land arrangement in China was significantly correlated with the proportional decrease of land reclamation (R2 = 0.93), and the proportional decrease of land development (R2 = 0.99) showed an obvious co-evolution pattern of increase and decrease; TILC (The area of land development/The area of land arrangement) decreased from 2.14 to 0.91 in 2002–2003. Since 2003, the dominant type of land consolidation in China has gradually changed from land development to land arrangement. However, the proportion of land development in QT (Qinghai-Tibet), JY (Jin-Yu), and FGH (Fujian-Guangdong-Hainan) areas is still more than 40%; the change of land consolidation type structure was influenced by policies, social and economic factors, such as urbanization rate, fixed assets investment, industrial proportion, and population density, and the regional difference was significant: the eastern section (JZS, Jiangsu-Zhejiang-Shanghai) is the industry proportion, the central area (HHAJ, Hunan-Hubei-Anhui-Jiangxi) is grain production and fixed assets investment, the western region (NW, Northwest China) has the urbanization rate, grain production, population density, and fixed assets investment. Land consolidation structure should be configured differentially in each region based on the identification of regional function orientation and comprehensive consideration of regional resource endowment and development needs and directions to improve the efficiency of land consolidation.