Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae

Kämpfer, Peter; Ruppel, Silke; Remus, Rainer

doi:10.1016/j.syapm.2004.12.007

Cited by 117 publications

(52 citation statements)

References 18 publications

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“…dissolvens (55%) (Hoffmann et al, 2005). These values were also consistent with the DNA G+C mol% of the other members of genus Enterobacter, which fall within a range of 52 60 mol% (Hoffmann et al, 2005;Kampfer et al, 2005;Stephan et al, 2007Stephan et al, , 2008. Generally, bacteria of the same genus have G+C mol% that are within 10% of each other, while bacteria that are within the same species may have G+C mol% values that differ by upto 5% points (Tamaoka and Komagata, 1984).…”

Section: Dna Base Compositionsupporting

confidence: 76%

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Khunthongpan

Bourneow

H‐Kittikun

et al. 2013

J. Gen. Appl. Microbiol.

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Section: Dna Base Compositionsupporting

confidence: 76%

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Khunthongpan

Bourneow

H‐Kittikun

et al. 2013

J. Gen. Appl. Microbiol.

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“…Although it is likely that the ''Japanese'' species do not actually belong to Pantoea, P. dispersa is considered a ''core'' species and its position within the genus must be determined. The polyphyletic nature of Pantoea is not unusual as several other genera within the Enterobacteriaceae have also been shown to be polyphyletic based on 16S rRNA phylogeny, including Enterobacter, Brenneria [24], Erwinia and Pectobacterium [46].…”

Section: Resultsmentioning

confidence: 98%

“…The following genes have been evaluated for these purposes: rpoB [13,24,27,31,39], infB [22], groEL [29]; gyrB [11], tuf and atpD [33,46], carA and recA [46]. Results have shown that they are more reliable than 16S rRNA gene sequences for species identification and for determining intra-and some inter-generic relationships [11,22,31,33].…”

Section: Introductionmentioning

confidence: 99%

Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA)

Brady

Cleenwerck

Venter

et al. 2008

Systematic and Applied Microbiology

329

262

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Species belonging to the genus of Pantoea are commonly isolated from plants, humans and the natural environment. The species of the genus are phenotypically closely related, making rapid identification of Pantoea strains to the species level difficult. Multilocus sequence analysis (MLSA) was evaluated as a means for rapid classification and identification of Pantoea strains. Four housekeeping genes, gyrB, rpoB, atpD and infB, were sequenced for strains assigned to the genus. Included in the study were (1) reference strains from the seven currently recognized species of Pantoea, (2) strains belonging to Brenner DNA groups II, IV and V, previously isolated from clinical samples and difficult to identify because of high phenotypic similarity to P. agglomerans or P. ananatis and (3) isolates from diseased Eucalyptus, maize and onion, assigned to the genus on the basis of phenotypic tests. Phylogenetic trees were constructed from the sequences of the four housekeeping genes. The ''core'' Pantoea species formed a cluster separate from the ''Japanese'' species which formed a tight cluster that included the genus Tatumella when the tree was based on concatenated sequences of the four genes. The MLSA data further suggested the existence of ten potential novel species, phylogenetically related to the currently recognized Pantoea species and the possible inclusion of Pectobacterium cypripedii in the genus Pantoea. When compared with DNA-DNA hybridization data, a good congruence was observed between both methods, with gyrB sequence data being the most consistent. In conclusion, MLSA of partial nucleotide sequences of the genes gyrB, rpoB, atpD and infB can be used for classification, identification and phylogenetic analyses of Pantoea strains. r 2008 Elsevier GmbH. All rights reserved. The GenBank/EMBL accession numbers for the sequences presented in this study are: EF988753-EF988838, EU145260-EU145275, EU344757-EU344760, FJ187830-FJ187834 (gyrB gene); EF988925-EF989010, EU145292-EU145307, EU344765-EU344768, FJ187840-FJ187844 (rpoB gene); EF988667-EF988752, EU145244-EU145259, EU344753-EU344756, FJ187825-FJ187829 (atpD gene); EF988839-EF988924, EU145276-EU145291, EU344761-EU344764, FJ187835-FJ187839 (infB gene) and EF688006-EF688012, EU216734-EU216737, EU344769-EU344770 (16S rRNA).Ã Corresponding author. Tel.: +2712 420 3934; fax: +2712 420 3960.E-mail address: teresa.coutinho@fabi.up.ac.za (T. Coutinho).Please cite this article as: C. Brady, et al., Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis

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“…The diazotrophic strain Enterobacter radicincitans DSM16656 T , formerly Pantoea agglomerans, was isolated from the phyllosphere of winter wheat under temperate climatic conditions and was described as a new species of the genus Enterobacter. The strain promoted the growth of roots and shoots and increased yields upon the inoculation of various plant species (2,3,6). While 10 genome sequences of Enterobacter strains have been published to date, only one displays plant growth-promoting characteristics similar to those of DSM16656 T , i.e., Enterobacter sp.…”

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confidence: 99%

Genome Sequence of Enterobacter radicincitans DSM16656 ^T , a Plant Growth-Promoting Endophyte

et al. 2012

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Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae

Cited by 117 publications

References 18 publications

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA)

Genome Sequence of Enterobacter radicincitans DSM16656 ^T , a Plant Growth-Promoting Endophyte

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Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae

Cited by 117 publications

References 18 publications

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand

Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA)

Genome Sequence of Enterobacter radicincitans DSM16656 T , a Plant Growth-Promoting Endophyte

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Genome Sequence of Enterobacter radicincitans DSM16656 ^T , a Plant Growth-Promoting Endophyte