Lotic environments are subjected to the impacts of human activities in an intense way in urban regions and one of the ways to assist in the environmental diagnosis is through the knowledge of the composition of bioindicator organisms, including microalgae. The objective of this work was to qualitatively characterize the Chlorophyceae Class Wille, providing descriptions and meristic data of the specimens as well as the environmental conditions in which the taxa were recorded. Water and phytoplankton samplings were carried out quarterly in 2020, in nine supply rivers, distributed in three river basins in the western region of Paraná (Paraná III basin, Piquiri basin and Baixo Iguaçu basin). The studied rivers were classified as oligotrophic or mesotrophic and the taxa were mostly rare. Thirty-six taxa belonging to the Chlorophyceae class were recorded, distributed in five families: Hydrodictyaceae Dumortier, Neochloridaceae Ettl & Komárek, Radiococcaceae Fott ex P.C.Silva, Scenedesmaceae Oltmanns, Selenastraceae Blackman & Tansley. These taxa have mainly cenobial representatives, with about 70% of the individuals in this thallus configuration, followed by 22% colonies and 8% unicellular thallus. Among the identified species, five occurred only in mesotrophic sites, warning for environments with tendencies to elevate their trophic, since they are genera previously associated with these conditions. Ten new citations were recorded for the State of Paraná, namely: Pseudopediastrum boryanum var. longicorne (Reinsch) P.M.Tsarenko, Radiococcus skujae I.Kostikov, T.Darienko, A.Lukesová & L.Hoffmann, Desmodesmus perforatus (Lemmermann) E.Hegewald, Desmodesmus subspicatus (Chodat) E.Hegewald & A.W.F.Schmidt, Scenedesmus indicus Philipose ex Hegewald, Engelberg & Paschma, Ankistrodesmus bernardii Komárek, Monoraphidium capricornutum (Printz) Nygaard, Monoraphidium caribeum Hindák, Raphidocelis danubiana var. elegans (Playfair) Taşkin & Alp, Selenastrum rinoi Komárek & Comas. Taxonomic studies, such as this one, are an important tool for understanding the flora, and in addition to contributing to the registration of species in aquatic ecosystems, they serve as a basis for ecological studies and other approaches used to preserve biodiversity in these places.