The contradiction between water supply and spring preservation issues is becoming increasingly apparent as Lijiang City develops. An investigation into the dynamic variations in the discharge rate of Heilongtan Spring in Lijiang City and the response law between the water level of the spring and precipitation is crucial for safeguarding the landscape water of Heilongtan Spring. This study employed linear regression analysis, Mann–Kendall (MK) mutation test, wavelet analysis, and vector autoregression (VAR) to examine the fluctuating pattern of the Heilongtan Spring discharge and the response of the Heilongtan Spring water level to precipitation in Lijiang City. Furthermore, the study discussed the influence of human activities on the alteration of Heilongtan Spring. The results indicate that the mean discharge rate of Heilongtan Spring is 0.94 m3/s, with an annual variation of 0.05 m3/s. The time series analysis reveals that the variation pattern of Heilongtan Spring discharge aligns with the precipitation trend in Lijiang City. Nevertheless, there is a distinction between the timing of the Heilongtan Spring discharge station point and the precipitation mutation point in Lijiang City. The significant primary cycle of spring discharge change occurs every 18 months, with a cycle length of 12 months. The vector autoregression (VAR) model demonstrates a lagged relationship between the water level of Heilongtan Spring and the precipitation in Lijiang City. Specifically, the water level of Heilongtan Spring has a four-month lag response to precipitation variability in Lijiang City. The results can provide a beneficial reference for preserving spring water and managing regional water resources.