Exploring an Emerging Issue: Crop Epigenetics

Vaschetto, Luis María

doi:10.1007/s11105-014-0796-z

Cited by 7 publications

(1 citation statement)

References 47 publications

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“…The way in which transcriptional activity overcomes the physical DNA structure and gene regulation mechanisms involves complex processes that are not yet fully understood. Epigenetic marking, characterized by a heritable and reversible change that regulates gene expression without modifying the DNA sequence [ 1 ], such as cytosine methylation, histone modifications, and interference RNA [ 2 ], is an open area of research for describing this process. One chemical modification that occurs in the DNA dinucleotide cytosine-guanine sequence (CpG) is 5-methylcytosine (5-mC), where CpG methylation occurs on the fifth carbon of the cytosine [ 1 ].…”

Section: Introductionmentioning

confidence: 99%

Silencing of Transposable Elements Mediated by 5-mC and Compensation of the Heterochromatin Content by Presence of B Chromosomes in Astyanax scabripinnis

Barbosa

Schemczssen-Graeff

Marques

et al. 2021

Cells

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The way in which transcriptional activity overcomes the physical DNA structure and gene regulation mechanisms involves complex processes that are not yet fully understood. Modifications in the cytosine-guanine sequence of DNA by 5-mC are preferentially located in heterochromatic regions and are related to gene silencing. Herein, we investigate evidence of epigenetic regulation related to the B chromosome model and transposable elements in A. scabripinnis. Indirect immunofluorescence using anti-5-mC to mark methylated regions was employed along with quantitative ELISA to determine the total genomic DNA methylation level. 5-mC signals were dispersed in the chromosomes of both females and males, with preferential accumulation in the B chromosome. In addition to the heterochromatic methylated regions, our results suggest that methylation is associated with transposable elements (LINE and Tc1-Mariner). Heterochromatin content was measured based on the C-band length in relation to the size of chromosome 1. The B chromosome in A. scabripinnis comprises heterochromatin located in the pericentromeric region of both arms of this isochromosome. In this context, individuals with B chromosomes should have an increased heterochromatin content when compared to individuals that do not. Although, both heterochromatin content and genome methylation showed no significant differences between sexes or in relation to the occurrence of B chromosomes. Our evidence suggests that the B chromosome can have a compensation effect on the heterochromatin content and that methylation possibly operates to silence TEs in A. scabripinnis. This represents a sui generis compensation and gene activity buffering mechanism.

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Section: Introductionmentioning

confidence: 99%