Background: Topoisomerase IIa (topoIIa) is an essential enzyme gene in regulating DNA structure and cell proliferation and is encoded by the TOP2A . Using cDNA microarray analysis, TOP2A has been reported to be one of the top genes overexpressed in Wilms' tumour. Aim: To evaluate the role of TopoIIa in Wilms' tumorigenesis and its prognostic value. Methods: TOP2A gene copy numbers were determined using the fluorescence in situ hybridisation technique, and protein expression levels of TopoIIa by immunostaining in 39 samples of primary and 18 samples of metastatic Wilms' tumour. Results: TOP2A gene amplification was detected only in anaplastic Wilms' tumours, and none of the Wilms' tumours showed deletion of the TOP2A gene. TopoIIa protein overexpression was detected in 97% of Wilms' tumours, and correlated strongly with proliferation, as measured by Ki-67 (r = 0.85). The high TopoIIa expression was associated with the presence of vascular invasion, prominent apoptosis, metastases and adverse clinical outcomes (p,0.05). Conclusions: Our findings suggest that TopoIIa overexpression in Wilms' tumours is caused by a change at the transcription level, except for anaplastic Wilms' tumours, in which gene amplification was present. High levels of TopoIIa protein are correlated with tumour aggressiveness. The assessment of TopoIIa expression in Wilms' tumour may have prognostic value.