Historic atmospheric acidic deposition resulting from the combustion of fossil fuels may alter the pools of important nutrients and base cations in sensitive forest soils. This raises concern that chronic acidic deposition, particularly when coupled with intensive forest biomass harvesting, may diminish long‐term soil fertility, forest productivity, and carbon storage potential. To address these concerns, the Fork Mountain long‐term soil productivity experiment was initiated in 1996 at the Fernow Experimental Forest, West Virginia. The replicated experimental design consists of 16 plots (0.2 ha) that receive one of four treatments: (1) whole‐tree harvesting (removal of all aboveground biomass, WT plots); (2) whole‐tree harvesting + ammonium‐sulfate fertilization (WT + NS plots); (3) whole‐tree harvesting + ammonium‐sulfate fertilization + dolomitic lime (WT + NS + Lime plots); and (4) untreated reference plots. We present forest floor and soil chemistry responses after ∼25 years of treatment and evaluate the temporal changes to illuminate these results. Soil acidification has occurred, and base cation movement through the soil profile was observed, with effective cation exchange capacity increasing slightly in the deepest soil horizon by the end of the 25 years. However, some of our hypotheses were not supported. In particular, soil C did not increase over time with fertilization/soil acidification but was mainly altered by WT harvesting, as were other nutrients. Dolomitic lime provided some amelioration of acidification, but surprisingly, most of the changes in base cations appeared to be the results of Mg, not Ca, likely due to greater tree requirements and uptake of Ca.