For accurate interpretations of palaeopalynological data, it is important to understand the influence of the current vegetation composition and characteristics on the formation of the palynological assemblage recorded in artificial or natural pollen traps. Therefore, in this study, modern pollen rain was characterized using artificial pollen traps under different ecological conditions and climatic seasons in Trilha da Mata Lake, Carajás North Ridge, southeastern Amazonia. The collection of pollen rain data comprises the total period from September 2015 to August 2016. There were two periods of low rainfall (September to December 2015 and May to August 2016) and one period of high rainfall (January to April 2016). The first two periods were represented by a predominance of canga vegetation pollen relative to forest pollen. Under dry conditions, the associations among the taxa Aparisthmium/Alchornea, Myrcia and Bellucia dichotoma were considered important for forest ecosystems, while those among Pleroma, Hyptis parkeri, Borreria and Perama carajensis were considered important for canga ecosystems. Under wet conditions, the forests were well represented by Schefflera, Anthurium lindmanianum, Pseudopiptadenia suaveolens and Glycydendron, and the most represented canga vegetation in the pollen rain were Poaceae undif., Miconia, M. acutistipula var. ferrea and Psychotria. Aparisthmium/Alchornea and Poaceae undif. Aparisthmium/Alchornea was related to periods of low water availability, and Poaceae undif. was associated with marshy or flooded environments. Thus, an increase in the influx of Poaceae undif. pollen grains was determined by variations in the extension of flooded areas, indicating an increase in the amount of rainfall and not the opposite case. Thus, future studies on vegetation reconstruction must consider modern pollen assemblages to precisely determine paleoenvironmental and paleoclimate conditions during sediment deposition.