Silica-scaled chrysophytes are a unique group of protists representing a major component of numerous aquatic habitats where they can significantly contribute to human well-being in many ways. In the present review, altogether 14 ecosystem services provided by silica-scaled chrysophytes were identified highlighting their importance and roles in aquatic ecosystems. The most important supporting services are related to primary production, nutrient- and biogeochemical cycling, as well as sediment formation. Additionally, they are involved in the regulation of climate, maintenance of air quality, biological control and water purification processes (as regulating services). The most relevant provisioning services include their usefulness in environmental monitoring (paleolimnology, ecological status assessment and climate modelling), production of biochemicals and provision of genetic resources. Cultural services are associated with aesthetic values, inspiration source and knowledge system as well. Although silica-scaled chrysophytes are one of the least studied groups of algae, here they are shown to provide important benefits and to have many further powerful opportunities for humans, thus their detailed research in the future is emphasised as an important key for human well-being.