Simulation of stochastic and variable sediment transport processes within models still poses a big challenge, especially in mountainous areas. Since sediment transport, including erosion and deposition, remains an unceasing problem in many areas, sediment modeling is perceived as a possible solution. This article combines a review of the selected sediment models with a presentation of the effects of several years of research using the DNS digital platform in the Western Carpathians. The review focuses on the main advantages and gaps in selected modeling tools with particular emphasis on one of the most popular: SWAT. The description of the digital platform—DNS is an example of how to answer these gaps by combining subsequent models, methods, and databases using their best features. To accentuate the benefits of such an approach, the effects of combining subsequent models (AdH/PTM) and methods (fingerprinting) on a common digital DNS space are presented, on the example of the Raba River (basin). In this way, both unique possibilities of estimating the amount of contamination carried with sediment particles and their sources, as well as sequencing of sedimentation in the reservoir, taking into account its subsequent zones, were obtained.