2020
DOI: 10.1007/s13205-020-02293-3
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Genome-wide identification, characterization, and expression analysis of the expansin gene family in watermelon (Citrullus lanatus)

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Cited by 8 publications
(6 citation statements)
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“…Using HMMsearch, 33 EXP proteins with two conserved domains, namely DPBB_1 and Pollen_allerg_1 domains, were ascertained in the melon genome. Based on a previously reported standardized nomenclature ( Gao et al., 2020 ; Liu et al., 2022a ), all CmEXPs were categorized into four subgroups and sequentially named based on their chromosomal locations. The identified full-length sequences of CmEXP-encoded proteins were between 151 (CmEXLA3) and 281 (CmEXPA9) amino acids, with relative MWs between 16.82 kDa (CmEXLA3) and 31.10 kDa (CmEXPA9).…”
Section: Resultsmentioning
confidence: 99%
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“…Using HMMsearch, 33 EXP proteins with two conserved domains, namely DPBB_1 and Pollen_allerg_1 domains, were ascertained in the melon genome. Based on a previously reported standardized nomenclature ( Gao et al., 2020 ; Liu et al., 2022a ), all CmEXPs were categorized into four subgroups and sequentially named based on their chromosomal locations. The identified full-length sequences of CmEXP-encoded proteins were between 151 (CmEXLA3) and 281 (CmEXPA9) amino acids, with relative MWs between 16.82 kDa (CmEXLA3) and 31.10 kDa (CmEXPA9).…”
Section: Resultsmentioning
confidence: 99%
“…EXPANSIN CENTRAL ( http://www.personal.psu.edu/fsl/ExpCentral/ , accessed on 10 July 2020) was utilized to obtain the EXP sequences from Arabidopsis thaliana and rice ( Oryza sativa ). Previous studies have identified the EXP genes from cucumber ( Cucumis sativus ) and watermelon ( Citrullus lanatus ) ( Gao et al., 2020 ; Liu et al., 2022a ). ClustalW was employed to align the EXP protein sequences of these five species.…”
Section: Methodsmentioning
confidence: 99%
“…EXPs were previously verified to be involved in response of exogenous plant hormones and abiotic stress [ 15 , 37 ]. Thus, the transcript abundances related to plant hormones and stress responsiveness were investigated.…”
Section: Resultsmentioning
confidence: 99%
“…& Nakai etc. (28)(29)(30)(31)(32)(33)(34)(51)(52)(53)(54)(55)(56)(57)(58). However, no systematic and thorough study of the expansin gene family was carried out earlier in tea.…”
Section: Discussionmentioning
confidence: 99%