Geological contexts that lack minimal stratigraphic and piezometric information can be challenging to produce an initial hydrogeological map in remote territories. This study proposes an approach to characterize a regional aquifer using transient electromagnetic (TEM) surveys. Given the presence of randomly dispersed boreholes, the Saint-Narcisse moraine in the Mauricie region of Quebec (Canada) is an appropriate site for collecting the required geophysical data, correlating the stratigraphic and piezometric information, and characterizing regional granular aquifers in terms of stratigraphy, geometry, thickness, and extent. In order to use all TEM results (i.e., 47 stations) acquired in the moraine area, we also correlated 13 TEM stations, 7 boreholes, and 6 stratigraphic cross-sections to derive an empirical and local petrophysical relationship and to establish a calibration chart of the sediments. Our TEM data, combined with piezometric mapping and the sedimentary records from boreholes and stratigraphic cross-sections, revealed the compartmentalization of a multi-kilometer morainic system and indicated the presence of two large unconfined granular aquifers overlying the bedrock. These aquifers extend more than 12 km east to west across the study area and are between 25 and >94 m thick. The TEM method provides critical information on groundwater at a regional scale by acquiring information from multiple stations within a short time span to a degree not possible with other existing methodologies.