eThe clinical performance of the cobas human papillomavirus (HPV) test for detection of high-grade disease in a colposcopyreferred population was compared with that of Hybrid Capture 2 (HC2). The overall agreement between the tests was 92.3%. Clinical sensitivity and specificity for detection of cervical intraepithelial neoplasia grade 2 or greater (CIN2؉) were 90.0% and 55.5% for cobas and 90.5% and 50.2% for HC2, respectively. In conclusion, both tests showed comparable performance for detection of CIN2؉.T esting for human papillomavirus (HPV) is now an important tool in managing women with cervical precancer. Many tests have been developed to detect HPV. Hybrid Capture 2 (HC2) was the first clinically validated HPV DNA detection assay. More recently, new tests, such as the cobas 4800 HPV test, have become available. The aim of this study was to evaluate the performance of the cobas compared to that of HC2 in a population of women with abnormal cervical cytology who were referred for colposcopy.Women who attended colposcopy clinics at the National Maternity Hospital and the Coombe Women's and Infants University Hospital, Dublin, Ireland, receiving colposcopy exams on the basis of abnormal cytology, were included in this study after giving consent. A cervical smear was taken at their first visit for HPV testing. HPV DNA testing was performed using HC2 (Qiagen) for the detection of 13 oncogenic HPV types (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, and 68) using the standard relative light unit (RLU) cutoff of 1.0 and the cobas (Roche Diagnostics), which detects HPV16 and HPV18 and 12 pooled high-risk (HR) HPV genotypes (31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, and 68). HPV genotyping was performed on a subset of discordant patient samples (those for whom adequate material remained; n ϭ 23/43) using the linear array (LA) HPV genotyping test (Roche Diagnostics) for detection of 37 HPV genotypes (6, 11, 16, 18, 26, 31, 33, 35, 39, 40, 42, 45, 51, 52, 53, 54, 55, 56, 58, 59, 61, 62, 64, 66, 67, 68, 69, 70, 71, 72, 73 IS39, and CP6108). Agreement between the cobas and HC2 tests was calculated using Cohen's kappa coefficient and clinical performance assessed by calculating the sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and relative 95% confidence intervals (CI) for detecting cervical intraepithelial neoplasia grade 2 (CIN2ϩ) and CIN3.Results were obtained from 558 women with a median age of 32 years (interquartile range of 28 to 39). The study population was composed of 465 women referred for colposcopy with minor cytological abnormalities, low-grade squamous intraepithelial lesions (LSIL), or atypical squamous cells of undetermined significance (ASCUS) and 96 women referred with high-grade squamous intraepithelial lesions (HSIL). The overall prevalence of HPV detected by the cobas was 62.7% (95% CI of 60.8% to 64.7%), compared to 65.8% (95% CI of 63.9% to 67.6%) for HC2. Agreement between the two tests was high at 92.3%, producing a kappa value of 0.832 (...