Background: The objective of this study was to detect the expression and distribution characteristics of five proteins [the hypoxia-inducible factor 1α (HIF-1α), HIF-2α, vascular endothelial growth factor (VEGF), VEGF-2 receptor (VEGFR-2) and hypoxia-induced mitogenic factor (HIMF)] in kidney of Tibetan sheep, plain sheep and goat. The results will provide the basic information for the comparative study of sheep breeds living at different altitudes. Materials and methods: The kidney tissues were collected from healthy adult Tibetan sheep, plain sheep and goats and made into paraffin sections. Histological characteristics were assessed by H&E staining. Expressions of HIF-1α, HIF-2α, VEGF, VEGFR-2 and HIMF proteins were measured by immunohistochemical staining. Results: Immunohistochemistry results showed that the positive expression signals of HIF-1α, HIF-2α, VEGF and VEGFR-2 were detected in epithelial cells of renal tubules and collecting tubules, renal corpuscles in the kidneys of the three sheep breeds. Positive expression signals of HIMF were detected in epithelial cells of proximal tubules and distal tubules in Tibetan sheep and epithelial cells of distal tubules in goat. Immunostaining intensity of HIF-1α, HIF-2α, VEGF and VEGFR-2 proteins in Tibetan sheep was significantly higher than that in both plain sheep and goat (p < 0.05). Immunostaining intensity of HIMF in Tibetan sheep was higher than goat (p < 0.05). Positive expression signals of HIMF were not detected in plain sheep. Conclusions: The expression and distribution characteristics of HIF-1α, HIF-2α, VEGF, VEGFR-2 and HIMF in the studied kidney tissues suggested that these proteins may be related to the physiological regulation of Tibetan sheep kidney in hypoxia environment, and therefore might be important regulating proteins for Tibetan sheep to adapt to high altitude hypoxia environment.