Identification and Validation of Functional miRNAs and Their Main Targets in Sorghum bicolor

Baqi, Abdul; Samiullah,; Rehman, Wajid; Bibi, Iram; Menaa, Farid; Khan, Yousaf; Albalawi, Doha A.; Sattar, Abdul

doi:10.1007/s12033-023-00988-5

Cited by 3 publications

(1 citation statement)

References 30 publications

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“…The precursors of the fennel miRNAs predicted herein exhibited a wide range of sizes, spanning from 68 to 210 nt and displayed stable stem-loop secondary structures, consistent with findings reported in numerous other recently studied non-model plant species including cranberry, 37 neem, 38 and Sorghum bicolor . 39 Remarkably, all the predicted precursor structures of the fennel miRNAs showed high MFEI values that ranged from 0.71 to 1.47, with an average of 1.03, which is greater than the MFEI values associated with other RNA species (e.g., mRNAs: 0.62–0.66, tRNAs: 0.64, or rRNAs: 0.59). 40 In our assessment, a notable predominance of uracil at the initial position of the predicted miRNAs was also acknowledged.…”

Section: Discussionmentioning

confidence: 82%

Identification and expression profiling of microRNAs in leaf tissues of Foeniculum vulgare Mill. under salinity stress

Bravo-Vázquez,

García-Ortega,

Medina-Feria

et al. 2024

Plant Signaling & Behavior

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Section: Discussionmentioning

confidence: 82%

Identification and expression profiling of microRNAs in leaf tissues of Foeniculum vulgare Mill. under salinity stress

Bravo-Vázquez,

García-Ortega,

Medina-Feria

et al. 2024

Plant Signaling & Behavior

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Identification and characterization of functional microRNAs and their significant targets in maize plants

Baqi,

Samiullah,

Khan

et al. 2024

J. Plant Biochem. Biotechnol.

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Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor

Wang,

Yu,

Zhang

et al. 2024

Plants

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Phospholipase C (PLC) is an essential enzyme involved in lipid signaling pathways crucial for regulating plant growth and responding to environmental stress. In sorghum, 11 PLC genes have been identified, comprising 6 PI-PLCs and 5 NPCs. Through phylogenetic and interspecies collinearity analyses, structural similarities between SbPLCs and ZmPLCs proteins have been observed, with a particularly strong collinearity between SbPLCs and OsPLCs. Promoter function analysis has shown that SbPLCs are significantly enriched under abiotic stress and hormonal stimuli, like ABA, jasmonic acid, drought, high temperature, and salt. Gene co-expression networks, constructed using a weighted gene co-expression network analysis (WGCNA), highlight distinct expression patterns of SbPLC1, SbPLC3a, and SbPLC4 in response to abiotic stress, providing further insights into the expression patterns and interactions of SbPLCs under various environmental stimuli. qRT-PCR results reveal variations in expression levels among most SbPLCs members under different stress conditions (drought, NaCl, NaHCO3), hormone treatments (ABA), and developmental stages, indicating both specific and overlapping expression patterns. This comprehensive analysis offers valuable insights into the roles of SbPLCs in sorghum, shedding light on their specific expression patterns, regulatory elements, and protein interactions across different environmental stimuli and developmental stages.

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Identification and Validation of Functional miRNAs and Their Main Targets in Sorghum bicolor

Cited by 3 publications

References 30 publications

Identification and expression profiling of microRNAs in leaf tissues of Foeniculum vulgare Mill. under salinity stress

Identification and expression profiling of microRNAs in leaf tissues of Foeniculum vulgare Mill. under salinity stress

Identification and characterization of functional microRNAs and their significant targets in maize plants

Genome-Wide Identification and Analysis of Phospholipase C Gene Family Reveals Orthologs, Co-Expression Networks, and Expression Profiling Under Abiotic Stress in Sorghum bicolor

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