The energy loss experienced by organic photovoltaics (OPVs) is the difference between the lowest photogenerated exciton energy of donor or acceptor and the open circuit energy. It sets a fundamental limit to the open circuit voltage and hence the efficiency of OPVs. This loss can be as large as 0.7 eV for fullerene acceptors, although non-fullerene acceptors (NFAs) reduce this to 0.6 eV. Here, we systematically quantify the relationship between charge transfer energy loss (Δ ), non-radiative recombination loss, exciton binding energy, and intra-and inter-molecular electron-phonon couplings. Density functional theory and comprehensive quantum mechanical modeling is used to associate molecular volume, effective conjugation length, and the nonbonding character of molecules to these several energy losses. Nonradiative recombination in donor/NFA heterojunctions is quantified by the charge transfer state emission quantum yield, and its Frank-Condon shift. Our analytical results are consistent with measurements where Δ is varied between 0 and 0.6 eV using a variety of fullerene derivatives and thiophene-based NFAs paired with donor molecules. Molecular design rules to decrease the energy loss in OPVs derived from our analysis are provided.at the donor-acceptor HJ is: [5] .(Heterojunctions employing fullerene derivatives usually suffer from a loss of > 0.7 eV.Alternatives to fullerene acceptors have therefore been sought to reduce while extending the absorption spectrum into the infrared. The development of nonfullerene acceptors (NFAs)with acceptor-donor-acceptor (a-d-a) or perylene diimide (PDI)-based molecular motifs give freedom to tune the molecular energetics, absorption spectra and thin film morphologies through