Asian cultivated rice (
Oryza sativa
L.) is the most important cultivated species in the AA genome species of the genus
Oryza
.
basmati
is a special and famous subgroup in Asian cultivated rice, and temperate
japonica
is one of the most important cultivated subgroup, too. However, hybrid sterility hinders the introgression of favorable traits and the utilization of hybrid vigour between the two subgroups. The genetic basis of intraspecific hybrid sterility between temperate
japonica
and
basmati
remained elusive. In this study, a novel hybrid sterility locus
S67
was identified, which caused hybrid male sterility in hybrids between the temperate
japonica
rice variety Dianjingyou 1 (DJY1) and the
basmati
rice variety Dom-sufid. Initial mapping with BC
1
F
1
, BC
4
F
1
, BC
4
F
2
populations and DNA markers located
S67
between RM5362 and K1-40.6 on the long arm of chromosome 1. Genetic analysis confirmed that
S67
caused a transmission advantage for the temperate
japonica
rice
S67-te
allele in the hybrid offsprings. This result not only fills the gap in the research on hybrid sterility between
basmati
and temperate
japonica
, but also lays a good foundation for the systematic study of the genetic nature of hybrid sterility between
basmati
and other subgroups, as well as the full exploration and utilization of this subgroup through the creation of wide or specific compatibility lines to overcome hybrid sterility. In addition, this result can also help us broaden our understanding of genetic differentiation within Asian cultivated rice and hybrid sterility between inter-subgroups.