“…Phototrophic microalgae (mainly benthic diatoms) devote the primary production (Xu et al, 2008;Debenest et al, 2009;Duong et al, 2010;Xu et al, 2012), whereas the heterotrophic protozoa act as variety of trophic-functional consumers, such as bacterivores, algivores, raptors and non-selectives, and transfer the flux of both elements and energy from picoand nano-plankton to benthos (Fischer et al, 2002;Kathol et al, 2009;Norf et al, 2009;Xu et al, 2011Xu et al, , 2014a. Both structural and functional variations in the microbial eukaryote communities may significantly influence the ecological equilibrium of the aquatic food web, especially the community structures of metazoa (Patterson et al, 1989;Norf et al, 2009;Xu et al, 2012Xu et al, , 2014a. Otherwise, microbial eukaryotes play an important function in maintaining and improving water quality due to their high tolerance to the extreme environmental conditions and inhabit biotopes compared to metazoa (Patterson et al, 1989;Coppellotti and Matarazzo, 2000;Xu et al, 2008).…”