Several bu er compositions were compared for their e ciency in protein extraction from both raw and roasted peanut and hazelnut samples, the nal goal being to understand the modi cation of protein solubility upon roasting and maximize the extraction yield. Denaturant conditions provided by urea-TBS bu er resulted in satisfactory extraction yields for both peanut and hazelnut samples, before and after the thermal treatment. In addition, di erent varieties of peanuts and hazelnuts were characterized to highlight the extent of variability in the protein pro le accounted by the varietal factor and eventual di erential resistance among cultivars to protein modi cation induced by the thermal processing. e protein pro le was characterized by gel electrophoresis, and speci c bands were analyzed by micro-HPLC-MS/MS coupled to software-based protein identi cation. No signi cant di erence was observed for the investigated hazelnut cultivars, namely, Campana, Romana, and Georgia, whereas interesting features were presented for the peanut varieties Virginia, Zambia, and China. In particular, Zambia variety lacked two bands of approximately 36 and 24 kDa that were visible in Virginia and China varieties, which could suggest a lower allergenic potential of this particular variety which deserves to be further investigated before drawing nal conclusions.