Integrated Proteomic and Metabolomic Analysis of Cassava cv. Kasetsart 50 Infected with Sri Lankan Cassava Mosaic Virus

Siriwan, Wanwisa; Vannatim, Nattachai; Chaowongdee, Somruthai; Roytrakul, Sittiruk; Charoenlappanit, Sawanya; Pongpamorn, Pornkanok; Paemanee, Atchara; Malichan, Srihunsa

doi:10.3390/agronomy13030945

Cited by 6 publications

(2 citation statements)

References 71 publications

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“…Fruits and vegetables usually induce the formation of dynamic defense mechanisms to cope with stress, such as the widespread MAPK signal transduction pathway and plant-pathogen interaction in plants during storage (Siriwan et al, 2023). In addition, plant hormones and ROS are involved in complex signal cascade regulatory networks, thus inducing the expression of defense genes and triggering defense responses (Jain et al, 2019).…”

Section: Disease Resistancementioning

confidence: 99%

Nitric oxide delays the postharvest nutritional quality decline of “Golden Hook” beans

He,

Wang,

Watkins

et al. 2024

Food Frontiers

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Abstract“Golden Hook” beans turn purple to different degrees due to the different compositions and contents of flavonoids during storage. At the same time, quality losses due to softening or pathogen invasion, and the deteriorations of flavor associated with carbohydrate metabolism occur. To reveal the effect of nitric oxide (NO) generated from sodium nitroprusside (SNP) on the postharvest quality of “Golden Hook” beans, we used metabolome, transcriptome, and assay for transposase‐accessible chromatin with high‐throughput sequencing approaches to compare beans at the time of treatment with untreated and SNP‐treated beans stored at 8°C for 12 days. The results showed that NO induced the expression of CERK1, FLS2, JAZ, and MYC2, stimulated the expression of polyphenol oxidase, CAT, and l‐ascorbate oxidase, the accumulation of flavonoids, and the synthesis of lignin in the antioxidant system, improving the ability of beans to resist stress while maintaining the balance of reactive oxygen species. High expressions of F3′H, FLS, INV, SUS, BCAT, and the accumulation of 6‐C‐methylquercetin‐3‐O‐rutinoside were associated with the maintenance of the fresh purplish red appearance of the beans in the SNP‐12d group, without loss of flavor. SNP treatment downregulated the transcription factors blimp‐1, OBP1, COG1, and AT1G6957 associated with bean senescence. These results provide insight into the postharvest quality control of “Golden Hook” beans.

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Section: Disease Resistancementioning

confidence: 99%

Nitric oxide delays the postharvest nutritional quality decline of “Golden Hook” beans

He,

Wang,

Watkins

et al. 2024

Food Frontiers

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“…Comparative proteomics in two rice cultivars under H 2 O 2 stress revealed proteins related to oxidative metabolism, photosynthesis, and cell defense mechanisms ( Bhattacharjee et al., 2023 ). Metabolomics coupled with proteomics in cassava cultivars under Sri Lankan cassava mosaic virus stress linked results from both approaches and identified pathways involved in plant viral interactions ( Siriwan et al., 2023 ). Thus, proteomics can deliver candidate genes that could be utilized for marker-assisted breeding programs ( Jan et al., 2023 ).…”

Section: Metabolomics Ionomics and Proteomicsmentioning

confidence: 99%

Omics-driven exploration and mining of key functional genes for the improvement of food and fiber crops

Naqvi,

Mahmood,

Mansoor

et al. 2024

Front. Plant Sci.

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The deployment of omics technologies has obtained an incredible boost over the past few decades with the advances in next-generation sequencing (NGS) technologies, innovative bioinformatics tools, and the deluge of available biological information. The major omics technologies in the limelight are genomics, transcriptomics, proteomics, metabolomics, and phenomics. These biotechnological advances have modernized crop breeding and opened new horizons for developing crop varieties with improved traits. The genomes of several crop species are sequenced, and a huge number of genes associated with crucial economic traits have been identified. These identified genes not only provide insights into the understanding of regulatory mechanisms of crop traits but also decipher practical grounds to assist in the molecular breeding of crops. This review discusses the potential of omics technologies for the acquisition of biological information and mining of the genes associated with important agronomic traits in important food and fiber crops, such as wheat, rice, maize, potato, tomato, cassava, and cotton. Different functional genomics approaches for the validation of these important genes are also highlighted. Furthermore, a list of genes discovered by employing omics approaches is being represented as potential targets for genetic modifications by the latest genome engineering methods for the development of climate-resilient crops that would in turn provide great impetus to secure global food security.

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Molecular insights and omics-based understanding of plant–microbe interactions under drought stress

Sharma,

Choudhary,

Chakdar

et al. 2023

World J Microbiol Biotechnol

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Integrated Proteomic and Metabolomic Analysis of Cassava cv. Kasetsart 50 Infected with Sri Lankan Cassava Mosaic Virus

Cited by 6 publications

References 71 publications

Nitric oxide delays the postharvest nutritional quality decline of “Golden Hook” beans

Nitric oxide delays the postharvest nutritional quality decline of “Golden Hook” beans

Omics-driven exploration and mining of key functional genes for the improvement of food and fiber crops

Molecular insights and omics-based understanding of plant–microbe interactions under drought stress

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